PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021294385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 134aa MW: 14528.5 Da PI: 7.0479 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37 | 5.5e-12 | 45 | 69 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA+ +C++C tV XP_021294385.1 45 CGSCRQLLSYPRGARQAKCSCCETV 69 ************************9 PP | |||||||
2 | zf-LSD1 | 42.6 | 9.6e-14 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+YP+GA+sVRC++C+ V XP_021294385.1 84 CGSCALLLMYPFGASSVRCSSCHLV 108 **********************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 134 aa Download sequence |
MANKEGGEQH QQQQVEEEEE GPPPGWQSIP PPQPPPSSEM AQMVCGSCRQ LLSYPRGARQ 60 AKCSCCETVN FVLEAAHQVG LVKCGSCALL LMYPFGASSV RCSSCHLVTE IGAHNRRPPW 120 SVQQGHPTPP KAVH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-38 | LSD family protein |