PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294300.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 785aa MW: 86319.3 Da PI: 6.5829

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	242	261	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H XP_021294300.1 242 ICDFFAR-GWCIKGSSCRFLH 261 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MPLSTSVVVP RAERDDERRA TSTTEREINS SDMEIDDDDE EEEEERDLQG SSNRDDASNI 60 LESKGHNGCL ESGSFTPGKS ETRVPSKSLA FSILLNEPLV TQKEDICMNY EGSKYPISGK 120 QPAKEKATQQ YVVSEKDARV ILQTKAPENH CEQQSNSKSH SVISEIHSSV AGKEVVITIP 180 VRYHSGGVND VKGFKEKSKQ MNLQSEDDKR KIKSRSAAPQ TSTGSLSPGA ELDSGSKRPA 240 IICDFFARGW CIKGSSCRFL HIKDSGNNPR QQPEVDVATA DVKGAVQLDE GFDNAAERSR 300 SPGSTDTLPS SVENKTALSS HFFSERVLPS GHDENQRLHP FHEINKFSLL QSKDKLMGTS 360 PASQQFSASI DDLGPSKDVR LNSIGQNLPA DSYTKPASLS DRGSSTLRNS FLPEYRSSLS 420 GSVTSLGNTY SENRAYCVST WMGSFPFGSS LSACSFGAQK VSDSDREHDT SRLSSLLQSS 480 SPFSRSEHDN FHLNDIARDP LHVADYRIKI SSDDWEPSVP FRPSFFVTSS ISPPRGQYNP 540 LRDSIDMSNA GERSLKFSFS SQGPSLLNVT YPPTYGDSTS TGPVVPECNG DKKIASCHNR 600 YPESLVDNNY HNSGKDSLTT DANDGTSAAD MQNGTLVKEE ISSVASHVKD ISKANKIDTD 660 LDGRHQRDGS RCKKDLKVGR GREKNEIDVE HKADGDPHKE SKAMKHFRAA LVDLIKELLK 720 PTWREGHLNR DAHNTIVKKA VDKVLGAIQP HQIPITFESV KQYLSSSQPK IAKLVQGYVD 780 KYSKS

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MPLSTSVVVP RAERDDERRA TSTTEREINS SDMEIDDDDE EEEEERDLQG SSNRDDASNI  60
LESKGHNGCL ESGSFTPGKS ETRVPSKSLA FSILLNEPLV TQKEDICMNY EGSKYPISGK  120
QPAKEKATQQ YVVSEKDARV ILQTKAPENH CEQQSNSKSH SVISEIHSSV AGKEVVITIP  180
VRYHSGGVND VKGFKEKSKQ MNLQSEDDKR KIKSRSAAPQ TSTGSLSPGA ELDSGSKRPA  240
IICDFFARGW CIKGSSCRFL HIKDSGNNPR QQPEVDVATA DVKGAVQLDE GFDNAAERSR  300
SPGSTDTLPS SVENKTALSS HFFSERVLPS GHDENQRLHP FHEINKFSLL QSKDKLMGTS  360
PASQQFSASI DDLGPSKDVR LNSIGQNLPA DSYTKPASLS DRGSSTLRNS FLPEYRSSLS  420
GSVTSLGNTY SENRAYCVST WMGSFPFGSS LSACSFGAQK VSDSDREHDT SRLSSLLQSS  480
SPFSRSEHDN FHLNDIARDP LHVADYRIKI SSDDWEPSVP FRPSFFVTSS ISPPRGQYNP  540
LRDSIDMSNA GERSLKFSFS SQGPSLLNVT YPPTYGDSTS TGPVVPECNG DKKIASCHNR  600
YPESLVDNNY HNSGKDSLTT DANDGTSAAD MQNGTLVKEE ISSVASHVKD ISKANKIDTD  660
LDGRHQRDGS RCKKDLKVGR GREKNEIDVE HKADGDPHKE SKAMKHFRAA LVDLIKELLK  720
PTWREGHLNR DAHNTIVKKA VDKVLGAIQP HQIPITFESV KQYLSSSQPK IAKLVQGYVD  780
KYSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-53	C3H family protein