PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021294299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | C3H | ||||||||
Protein Properties | Length: 788aa MW: 86785.9 Da PI: 6.6515 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.5e-07 | 245 | 264 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H XP_021294299.1 245 ICDFFAR-GWCIKGSSCRFLH 264 6******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence |
MPLSTSVVVP RAERDDERRA TSTTEREINS SDMEIDDDDE EEEEERDLQG SSNRDDASNI 60 LESKGHNGCL ESGSFTPGKS ETRVPSKSLA FSILLNEPLV TQKEDICMNY EGSKYPISGK 120 QPAKEKATQQ YVVSEKDARV ILQTKAPENH CEQQSNSKSH SVISEIHSSV AGKEVVITIP 180 VRYHSGGVND VKGFKEKSKQ MNLQSEDDKR KIKSRFYRSA APQTSTGSLS PGAELDSGSK 240 RPAIICDFFA RGWCIKGSSC RFLHIKDSGN NPRQQPEVDV ATADVKGAVQ LDEGFDNAAE 300 RSRSPGSTDT LPSSVENKTA LSSHFFSERV LPSGHDENQR LHPFHEINKF SLLQSKDKLM 360 GTSPASQQFS ASIDDLGPSK DVRLNSIGQN LPADSYTKPA SLSDRGSSTL RNSFLPEYRS 420 SLSGSVTSLG NTYSENRAYC VSTWMGSFPF GSSLSACSFG AQKVSDSDRE HDTSRLSSLL 480 QSSSPFSRSE HDNFHLNDIA RDPLHVADYR IKISSDDWEP SVPFRPSFFV TSSISPPRGQ 540 YNPLRDSIDM SNAGERSLKF SFSSQGPSLL NVTYPPTYGD STSTGPVVPE CNGDKKIASC 600 HNRYPESLVD NNYHNSGKDS LTTDANDGTS AADMQNGTLV KEEISSVASH VKDISKANKI 660 DTDLDGRHQR DGSRCKKDLK VGRGREKNEI DVEHKADGDP HKESKAMKHF RAALVDLIKE 720 LLKPTWREGH LNRDAHNTIV KKAVDKVLGA IQPHQIPITF ESVKQYLSSS QPKIAKLVQG 780 YVDKYSKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-53 | C3H family protein |