PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294298.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 788aa MW: 86785.9 Da PI: 6.6515

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294298.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.5e-07	245	264	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffar G+C G++C+F H XP_021294298.1 245 ICDFFAR-GWCIKGSSCRFLH 264 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 788 aa Download sequence
MPLSTSVVVP RAERDDERRA TSTTEREINS SDMEIDDDDE EEEEERDLQG SSNRDDASNI 60 LESKGHNGCL ESGSFTPGKS ETRVPSKSLA FSILLNEPLV TQKEDICMNY EGSKYPISGK 120 QPAKEKATQQ YVVSEKDARV ILQTKAPENH CEQQSNSKSH SVISEIHSSV AGKEVVITIP 180 VRYHSGGVND VKGFKEKSKQ MNLQSEDDKR KIKSRFYRSA APQTSTGSLS PGAELDSGSK 240 RPAIICDFFA RGWCIKGSSC RFLHIKDSGN NPRQQPEVDV ATADVKGAVQ LDEGFDNAAE 300 RSRSPGSTDT LPSSVENKTA LSSHFFSERV LPSGHDENQR LHPFHEINKF SLLQSKDKLM 360 GTSPASQQFS ASIDDLGPSK DVRLNSIGQN LPADSYTKPA SLSDRGSSTL RNSFLPEYRS 420 SLSGSVTSLG NTYSENRAYC VSTWMGSFPF GSSLSACSFG AQKVSDSDRE HDTSRLSSLL 480 QSSSPFSRSE HDNFHLNDIA RDPLHVADYR IKISSDDWEP SVPFRPSFFV TSSISPPRGQ 540 YNPLRDSIDM SNAGERSLKF SFSSQGPSLL NVTYPPTYGD STSTGPVVPE CNGDKKIASC 600 HNRYPESLVD NNYHNSGKDS LTTDANDGTS AADMQNGTLV KEEISSVASH VKDISKANKI 660 DTDLDGRHQR DGSRCKKDLK VGRGREKNEI DVEHKADGDP HKESKAMKHF RAALVDLIKE 720 LLKPTWREGH LNRDAHNTIV KKAVDKVLGA IQPHQIPITF ESVKQYLSSS QPKIAKLVQG 780 YVDKYSKS

Sequence ? help Back to Top

Protein Sequence Length: 788 aa Download sequence

MPLSTSVVVP RAERDDERRA TSTTEREINS SDMEIDDDDE EEEEERDLQG SSNRDDASNI  60
LESKGHNGCL ESGSFTPGKS ETRVPSKSLA FSILLNEPLV TQKEDICMNY EGSKYPISGK  120
QPAKEKATQQ YVVSEKDARV ILQTKAPENH CEQQSNSKSH SVISEIHSSV AGKEVVITIP  180
VRYHSGGVND VKGFKEKSKQ MNLQSEDDKR KIKSRFYRSA APQTSTGSLS PGAELDSGSK  240
RPAIICDFFA RGWCIKGSSC RFLHIKDSGN NPRQQPEVDV ATADVKGAVQ LDEGFDNAAE  300
RSRSPGSTDT LPSSVENKTA LSSHFFSERV LPSGHDENQR LHPFHEINKF SLLQSKDKLM  360
GTSPASQQFS ASIDDLGPSK DVRLNSIGQN LPADSYTKPA SLSDRGSSTL RNSFLPEYRS  420
SLSGSVTSLG NTYSENRAYC VSTWMGSFPF GSSLSACSFG AQKVSDSDRE HDTSRLSSLL  480
QSSSPFSRSE HDNFHLNDIA RDPLHVADYR IKISSDDWEP SVPFRPSFFV TSSISPPRGQ  540
YNPLRDSIDM SNAGERSLKF SFSSQGPSLL NVTYPPTYGD STSTGPVVPE CNGDKKIASC  600
HNRYPESLVD NNYHNSGKDS LTTDANDGTS AADMQNGTLV KEEISSVASH VKDISKANKI  660
DTDLDGRHQR DGSRCKKDLK VGRGREKNEI DVEHKADGDP HKESKAMKHF RAALVDLIKE  720
LLKPTWREGH LNRDAHNTIV KKAVDKVLGA IQPHQIPITF ESVKQYLSSS QPKIAKLVQG  780
YVDKYSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-53	C3H family protein