PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294283.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 508aa MW: 56916.7 Da PI: 8.8959

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.1	1.8e-12	459	505	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 rW+ E+e l++av+++G++ W+ I r + +Rt+ ++k++w++ XP_021294283.1 459 RWSLHEEEVLAEAVRKYGSH-WAQILRAYPlefVNRTAGDLKDKWRNM 505 8*****************.***********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MDDFFLVHLP VACSSLLRKF LLKEEDEMNM SKSDFSTTCL LKKAFIVRSI QEGIANGSVA 60 EEILDSLLLI EQVDRKQGLP VFDSMKSAFC AVAVHCTLAS LTRSWPCYYD SILRIWRTRI 120 RILEDSASSE LVGPDLDKWR KEVEAALWDS EASQRLLRIN TRDDALRCLR VFVEEARSSM 180 KPAFLQLTLA AAQAICRPHR GTDKGKGILR VNPQRRCKLG VPHRHYKVPV EIADSKEEQQ 240 PSYSKFASLS TSEVNKVQEA LKTSTADLLA VVTDPLPKVL EVAEKVASER AGKTLRSEAI 300 LEDGNKNKDV PATSVNPTMA SAQAERVASD TGGENLRAEA IVEDHSKKGK RVPPPSVNPT 360 KDKSDPPSSV NPTTEPALAK EGNHERQASI HQNEAPRPSL MERNGTARTY EWEDSIDGSS 420 QESSGGSTRC RLPSPKIKPA SPLKEYENKK WVRRRKIHRW SLHEEEVLAE AVRKYGSHWA 480 QILRAYPLEF VNRTAGDLKD KWRNMTGK

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MDDFFLVHLP VACSSLLRKF LLKEEDEMNM SKSDFSTTCL LKKAFIVRSI QEGIANGSVA  60
EEILDSLLLI EQVDRKQGLP VFDSMKSAFC AVAVHCTLAS LTRSWPCYYD SILRIWRTRI  120
RILEDSASSE LVGPDLDKWR KEVEAALWDS EASQRLLRIN TRDDALRCLR VFVEEARSSM  180
KPAFLQLTLA AAQAICRPHR GTDKGKGILR VNPQRRCKLG VPHRHYKVPV EIADSKEEQQ  240
PSYSKFASLS TSEVNKVQEA LKTSTADLLA VVTDPLPKVL EVAEKVASER AGKTLRSEAI  300
LEDGNKNKDV PATSVNPTMA SAQAERVASD TGGENLRAEA IVEDHSKKGK RVPPPSVNPT  360
KDKSDPPSSV NPTTEPALAK EGNHERQASI HQNEAPRPSL MERNGTARTY EWEDSIDGSS  420
QESSGGSTRC RLPSPKIKPA SPLKEYENKK WVRRRKIHRW SLHEEEVLAE AVRKYGSHWA  480
QILRAYPLEF VNRTAGDLKD KWRNMTGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	450	456	KWVRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	4e-20	MYB_related family protein