PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294198.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 268aa    MW: 29676.6 Da    PI: 8.7856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-1281127354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+llP +     +K++Ka+ L ++++ +k+L
  XP_021294198.1  81 KSHSEAERRRRERINAHLDTLRSLLPCR-----EKMDKATLLGEVIRQVKEL 127
                     58*************************9.....8***********9988887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MFRMAAYSFN NNFSSGNCYS GLFNPLSRDM GPRNGSSRGG SLSVSVSQTL VLDSEKGELV  60
KAPVKVGKKS VSEEKVIAAL KSHSEAERRR RERINAHLDT LRSLLPCREK MDKATLLGEV  120
IRQVKELKKN ATEASKGFLV PMDDDEVNVE PCEEEANGTF LFKASICCDY RPELLTDLRQ  180
ALDALPIKMV KAETSTLGSR LKNDFVFAGY RTAHADDAEA RRFLACSIHQ ALNSVLEKAS  240
ASPEYSPSSI FPNKRRRMSY FDSSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-34bHLH family protein