PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294107.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TALE

Protein Properties

Length: 360aa MW: 40578.5 Da PI: 6.7042

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	288	322	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_021294107.1 288 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 322 569*****************************885 PP
2	ELK	41.1	3.6e-14	242	263	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_021294107.1 242 ELKGQLLRKYSGYLGSLKQEFM 263 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEGGSNSTSC MIAFGHNGHG LCPMTMMPLM TSHPHHQHHH HHHPHPPNSD SYSLFLPLPP 60 TNNQDQNHNS SSGSSMILDD HNNNNNSTNN NTGCYFMETN DGSSSSVKAK IMAHPHYHRL 120 LAAYVNCQKQ VGAPPEVVAR LEEACASAAT MGPSGTGCLG EDPALDQFME AYCEMLTKYE 180 QELSKPFKEA MLFLQRVECQ FKALTVSSPS SACGEAADRN GSSEEEVDVN NNFIDPLAED 240 RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL 300 AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH YYMDNVLGNP FPMDLSPTLL

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEGGSNSTSC MIAFGHNGHG LCPMTMMPLM TSHPHHQHHH HHHPHPPNSD SYSLFLPLPP  60
TNNQDQNHNS SSGSSMILDD HNNNNNSTNN NTGCYFMETN DGSSSSVKAK IMAHPHYHRL  120
LAAYVNCQKQ VGAPPEVVAR LEEACASAAT MGPSGTGCLG EDPALDQFME AYCEMLTKYE  180
QELSKPFKEA MLFLQRVECQ FKALTVSSPS SACGEAADRN GSSEEEVDVN NNFIDPLAED  240
RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKLAL  300
AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH YYMDNVLGNP FPMDLSPTLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	258	267	LKQEFMKKRK
2	264	268	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-144	TALE family protein