PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294042.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 466aa MW: 50644.2 Da PI: 5.4859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	356	393	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_021294042.1 356 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 393 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MAEEFHAGIC GGTWWNSSKS MFSGCSSPCS AGIADMGSFG SWGADTVDIK ATRSCDQESN 60 NSVSDSSIVF QGAHQKPQQA DSDSGGSSIL IDSTLQMMGF GLSSSTTSDW NQSLLRSNGR 120 TESYSSILQE DINSRLSRRQ ETGMDSSQIQ KDWSPKSYTS PGEDSSIATF KPINQDFSVT 180 KSGDSTPACQ GLSAGFPMGS ASYGYPSTVL LQSLFETDPQ PQQSLLNNRS INYMSAPATY 240 GANANELSSP PWPKLAPFLR PSMPKQQQPS SLHFSNNTPF WNASSTGLND VKASFLPSPQ 300 SQFLAQTFEE KPNCPSLTTK TNTEEVRDSI KKGSSEPPFK RPRIETPSPL PTFKVRKEKL 360 GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVNVL STPYMKQAAA ASIQQQQSPD 420 KLMEPEGPKQ DLRSRGLCLV PISSTFPVAS ETTADFWTPT FGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MAEEFHAGIC GGTWWNSSKS MFSGCSSPCS AGIADMGSFG SWGADTVDIK ATRSCDQESN  60
NSVSDSSIVF QGAHQKPQQA DSDSGGSSIL IDSTLQMMGF GLSSSTTSDW NQSLLRSNGR  120
TESYSSILQE DINSRLSRRQ ETGMDSSQIQ KDWSPKSYTS PGEDSSIATF KPINQDFSVT  180
KSGDSTPACQ GLSAGFPMGS ASYGYPSTVL LQSLFETDPQ PQQSLLNNRS INYMSAPATY  240
GANANELSSP PWPKLAPFLR PSMPKQQQPS SLHFSNNTPF WNASSTGLND VKASFLPSPQ  300
SQFLAQTFEE KPNCPSLTTK TNTEEVRDSI KKGSSEPPFK RPRIETPSPL PTFKVRKEKL  360
GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVNVL STPYMKQAAA ASIQQQQSPD  420
KLMEPEGPKQ DLRSRGLCLV PISSTFPVAS ETTADFWTPT FGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	9e-73	bHLH family protein