PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294035.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 585aa MW: 64662.7 Da PI: 6.5664

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.9	1.6e-15	264	323	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021294035.1 264 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 323 78*****************655454478446***********************98 PP
2	AP2	48	3e-15	366	417	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_021294035.1 366 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 417 78**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MSNWLGFSLT PHLRIDESFG REDHGGFSSV MPLRSDGSLC VVDPFRRSSN GAEDWRYENN 60 IGGATESEDG PKLEDFLGCC YSNSPSEETK GYGQTQEDQN QNIVSTRINV NVAPGYNTNG 120 GMEGGETLTN PSSLIQTYQY NENPQTLMAN DSLQQCDPNP NQNHNHNHNN GMYHVPFESA 180 TSVSGFKSWL RQTPFSDGKA SSEASNHCNF QTLSLTMSPS SQNGTMAAIA PLEGVDNRKR 240 PVGKSLAREP VPRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY 300 LGGYDKEEKA ARAYDLAALK YWGPTTHINF PLSTYEKELE EMKNMTRQEF VAHLRRKSSG 360 FSRGASVYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA 420 VTNFDISRYD VKRICSSSTL IGGDLAKRSP KDSAPIALED YNSCASSTSA QPLLAISNGE 480 ASREVADMVW NANSDDNRQY QSSNTNNDAS LATSNGRNSS NPQSPKCSVG LASEFGIGGD 540 YTQGYFSLEG PKFEDGSNGT ENSNENRLGS LGMVHQVPMF ALWNE

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MSNWLGFSLT PHLRIDESFG REDHGGFSSV MPLRSDGSLC VVDPFRRSSN GAEDWRYENN  60
IGGATESEDG PKLEDFLGCC YSNSPSEETK GYGQTQEDQN QNIVSTRINV NVAPGYNTNG  120
GMEGGETLTN PSSLIQTYQY NENPQTLMAN DSLQQCDPNP NQNHNHNHNN GMYHVPFESA  180
TSVSGFKSWL RQTPFSDGKA SSEASNHCNF QTLSLTMSPS SQNGTMAAIA PLEGVDNRKR  240
PVGKSLAREP VPRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY  300
LGGYDKEEKA ARAYDLAALK YWGPTTHINF PLSTYEKELE EMKNMTRQEF VAHLRRKSSG  360
FSRGASVYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA  420
VTNFDISRYD VKRICSSSTL IGGDLAKRSP KDSAPIALED YNSCASSTSA QPLLAISNGE  480
ASREVADMVW NANSDDNRQY QSSNTNNDAS LATSNGRNSS NPQSPKCSVG LASEFGIGGD  540
YTQGYFSLEG PKFEDGSNGT ENSNENRLGS LGMVHQVPMF ALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-146	AP2 family protein