PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293761.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 594aa    MW: 68077.6 Da    PI: 9.9123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293761.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07555575425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      +Cr++a+ G C yG++CkF H
  XP_021293761.1 555 QPCRYHAQ-GRCYYGENCKFLH 575
                     69**9999.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    
MAISDSDQES SKDYNEGFEE EEYSSNHGSD PDYDSGTDPS YSIEEETRAK LQNFSIKKKS  60
RAGVAKDSDL SIKKDPEEME MNFPEVDDKS YEYVQKIIKA GKLEKLKVDQ CKVYLRKNGL  120
RLSGKKDMLM QRIKEHLEIL NGGGEKKYPL SSFVLNCKGD ACTGDVVMFE QNVYEMFNIA  180
SRSASGPPCG TRIVAGRIVK ESYGAAKQQH TFTIEVLWSK GEKPLPPLHP LLIKGRNLYR  240
LKTLRQKWED EGERQRVLME KHSRGSLARS DREVRILERE RREMLRANRI FKKEGRNKTQ  300
SQLTSTTTTE IRPQQPGTSS NSGIVAPQHQ QSGLTVVAGK PTSQTHGSGS VFDLEKPPIM  360
SQQSGFLAEP QQLANQPKQS GLSVTPREKR TQLTEQLAFS PNFKAKSFQS EYKNVHVPQR  420
LANKPKQSGF SVAAREKRIQ LPEQSGFSPN FKARSFQSEY KNVHVWEGYQ NQIPRYSVQS  480
SSIPEVQLQK GDKFHVEYRK TNFHMNKYQN SINDKSTRSG TSKLPETSYH RHQLKSMNNC  540
HPVTPPQRRG FLSQQPCRYH AQGRCYYGEN CKFLHETREL HGAEEKRFWR YGHY