PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293624.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 603aa MW: 65997.4 Da PI: 8.7403

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29	2.5e-09	489	537	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v+++G g+W+ I r Rt ++k++w+++l XP_021293624.1 489 AWTLSEVMKLVEGVAKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 537 7**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
METVVLVEGS NEGKFEETGL EKSNSALSSP KHVADPVVYK LVRVEGDGRL VPATDDELME 60 VEGLLESEKR EIHIVADTGQ ALGCTSNEVS SSGIQLESSE GLSQSENTEA DAEKLSARLE 120 ETVLSGTQCM SDNRATQSGT VGERSKPLDE LIEGRSSTSA GCISSKPDFS KLKGEICLDN 180 LSIKELHEVF KATFGRDTTV KDKQWLKRRI AMGLTNSCDV STTTFVIKDN KLVKKGKEDS 240 CNNVDGAPSE DHPVVGVENH EDLLNSHSSQ IDEHQTTSGT RVGSNSRENT YSEELAGEQR 300 AAKRVRKPTR RYIEELSKEE SKEYSGRLIP SAKNIGIRPM ALKSHARPAR NGFLDGRTII 360 TRLDSLGGSG IQVPCVYRVR RSRPRKNVMA LLKFHPSGMG MTTTFVKKGL DIHSCQMDNG 420 SGNKVSEARS TPEQTLQQFV AEPKKEKPAA ELGQRMGLKN VNLSGDSSDD NVVTVPTAKG 480 GTRRKHHRAW TLSEVMKLVE GVAKYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS 540 FAQTPVDKGV NSRKHPSMPI PAPILLRVRE LAEMQSQAPP NLTASKLAAC GGRSVNETRS 600 GYL

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

METVVLVEGS NEGKFEETGL EKSNSALSSP KHVADPVVYK LVRVEGDGRL VPATDDELME  60
VEGLLESEKR EIHIVADTGQ ALGCTSNEVS SSGIQLESSE GLSQSENTEA DAEKLSARLE  120
ETVLSGTQCM SDNRATQSGT VGERSKPLDE LIEGRSSTSA GCISSKPDFS KLKGEICLDN  180
LSIKELHEVF KATFGRDTTV KDKQWLKRRI AMGLTNSCDV STTTFVIKDN KLVKKGKEDS  240
CNNVDGAPSE DHPVVGVENH EDLLNSHSSQ IDEHQTTSGT RVGSNSRENT YSEELAGEQR  300
AAKRVRKPTR RYIEELSKEE SKEYSGRLIP SAKNIGIRPM ALKSHARPAR NGFLDGRTII  360
TRLDSLGGSG IQVPCVYRVR RSRPRKNVMA LLKFHPSGMG MTTTFVKKGL DIHSCQMDNG  420
SGNKVSEARS TPEQTLQQFV AEPKKEKPAA ELGQRMGLKN VNLSGDSSDD NVVTVPTAKG  480
GTRRKHHRAW TLSEVMKLVE GVAKYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS  540
FAQTPVDKGV NSRKHPSMPI PAPILLRVRE LAEMQSQAPP NLTASKLAAC GGRSVNETRS  600
GYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	386	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-127	MYB_related family protein