PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293623.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 659aa MW: 72565.8 Da PI: 8.3454

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.9	2.8e-09	545	593	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v+++G g+W+ I r Rt ++k++w+++l XP_021293623.1 545 AWTLSEVMKLVEGVAKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 593 7**************************9999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
METVVLVEGS NEGKFEETGL EKSNSALSSP KHVADPVVYK LVRVEGDGRL VPATDDELME 60 VEGLLESEKR EIHIVADTGQ ALGCTSNEVS SSGIQLESSE GLSQSENTEA DAEKLSARLE 120 YIEEMLHKVK HEERLRLACR SPDHSSAYMN VDSHCSEQHD KLLGIDQKLQ SQIPLQETVL 180 SGTQCMSDNR ATQSGTVGER SKPLDELIEG RSSTSAGCIS SKPDFSKLKG EICLDNLSIK 240 ELHEVFKATF GRDTTVKDKQ WLKRRIAMGL TNSCDVSTTT FVIKDNKLVK KGKEDSCNNV 300 DGAPSEDHPV VGVENHEDLL NSHSSQIDEH QTTSGTRVGS NSRENTYSEE LAGEQRAAKR 360 VRKPTRRYIE ELSKEESKEY SGRLIPSAKN IGIRPMALKS HARPARNGFL DGRTIITRLD 420 SLGGSGIQVP CVYRVRRSRP RKNVMALLKF HPSGMGMTTT FVKKGLDIHS CQMDNGSGNK 480 VSEARSTPEQ TLQQFVAEPK KEKPAAELGQ RMGLKNVNLS GDSSDDNVVT VPTAKGGTRR 540 KHHRAWTLSE VMKLVEGVAK YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASFAQT 600 PVDKGVNSRK HPSMPIPAPI LLRVRELAEM QSQAPPNLTA SKLAACGGRS VNETRSGYL

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

METVVLVEGS NEGKFEETGL EKSNSALSSP KHVADPVVYK LVRVEGDGRL VPATDDELME  60
VEGLLESEKR EIHIVADTGQ ALGCTSNEVS SSGIQLESSE GLSQSENTEA DAEKLSARLE  120
YIEEMLHKVK HEERLRLACR SPDHSSAYMN VDSHCSEQHD KLLGIDQKLQ SQIPLQETVL  180
SGTQCMSDNR ATQSGTVGER SKPLDELIEG RSSTSAGCIS SKPDFSKLKG EICLDNLSIK  240
ELHEVFKATF GRDTTVKDKQ WLKRRIAMGL TNSCDVSTTT FVIKDNKLVK KGKEDSCNNV  300
DGAPSEDHPV VGVENHEDLL NSHSSQIDEH QTTSGTRVGS NSRENTYSEE LAGEQRAAKR  360
VRKPTRRYIE ELSKEESKEY SGRLIPSAKN IGIRPMALKS HARPARNGFL DGRTIITRLD  420
SLGGSGIQVP CVYRVRRSRP RKNVMALLKF HPSGMGMTTT FVKKGLDIHS CQMDNGSGNK  480
VSEARSTPEQ TLQQFVAEPK KEKPAAELGQ RMGLKNVNLS GDSSDDNVVT VPTAKGGTRR  540
KHHRAWTLSE VMKLVEGVAK YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASFAQT  600
PVDKGVNSRK HPSMPIPAPI LLRVRELAEM QSQAPPNLTA SKLAACGGRS VNETRSGYL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	436	442	RRSRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-132	MYB_related family protein