PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293619.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Trihelix
Protein Properties Length: 301aa    MW: 33765.7 Da    PI: 8.9863
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.8e-1532123187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W+++ + +L++a  ++  +l+rg+l++++W++ ++++     + ++ +r+ +qCk++++ ++k+yk +k++  + + + +s++p+f++l+a
  XP_021293619.1  32 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDXADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFERLDA 123
                     7****************************************99999***************************999888899*******985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MGDLTDSLTP STTPTPLSTT PHSRPLPVRE DCWSEEATST LVDAWGRRYL ELNRGNLRQK  60
DWQDXADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KARVTSSNGT LTSSWPFFER  120
LDALIGSNFS AKKPSPSPKI SPKPSPRLSP RIPGSPPVAL PLPLPYRRTP ASATVVALPQ  180
KRPADDGYFR RNYSAVAAAA AAAAAESDEE EGEESEAEES EGEGEEREGM SRLARAIERF  240
GEVYERVEGE KLRQMVELEK QRMQFAKDLE VQRMRMFMDT QVQLERIKRG KRSSGSSDIY  300
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-40Trihelix family protein