PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293577.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 556aa MW: 59439 Da PI: 5.5658

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	6.9e-09	373	421	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_021293577.1 373 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 421 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MDIGEKDKYE LEKRNGNHIN YQAPGMSSDW QFGGANLTST PMSLVSSDNP MAIGSSCASA 60 SVVDSFGTSL WEHASNSQNL GFCDINAQNG ASSSNGMAIG KGGNSLRSTI DRPFDMGWNT 120 ASSMLRGGIF LPNATGILPQ SLSQLPADSA FIERAARFSS FNGGSFCDMV NPFGIPESMG 180 LYTRGVGLMQ GPQDIFAISG MKTVSVVESE KSKLNSTEAS KDVSLQIENR ATQESPLKNE 240 KKSESLVRSN EEAKQGNGGS GNESDEAEFS GGIGGQDEPS ALDGLSLEPS AKGLSSKKRK 300 RSVQDAEVDQ AKGGQPPVEA AKDNAENQKK GDQNQTTTIN KTAGKQGKQG SQASDPPKED 360 YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL 420 QRQVEFLSMK LATVNPRLNF NIEGLLAKDI IQSRAGPSSL GFSPDMSVGY PSLHPSQPGL 480 VQAALPVMGN TSDVIRRTLS SQFTPMNGGY KEPNQLSNAW EDDLHNVVQM NYGTGAPSDS 540 QDVNGSLPSG HLKVEL

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MDIGEKDKYE LEKRNGNHIN YQAPGMSSDW QFGGANLTST PMSLVSSDNP MAIGSSCASA  60
SVVDSFGTSL WEHASNSQNL GFCDINAQNG ASSSNGMAIG KGGNSLRSTI DRPFDMGWNT  120
ASSMLRGGIF LPNATGILPQ SLSQLPADSA FIERAARFSS FNGGSFCDMV NPFGIPESMG  180
LYTRGVGLMQ GPQDIFAISG MKTVSVVESE KSKLNSTEAS KDVSLQIENR ATQESPLKNE  240
KKSESLVRSN EEAKQGNGGS GNESDEAEFS GGIGGQDEPS ALDGLSLEPS AKGLSSKKRK  300
RSVQDAEVDQ AKGGQPPVEA AKDNAENQKK GDQNQTTTIN KTAGKQGKQG SQASDPPKED  360
YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL  420
QRQVEFLSMK LATVNPRLNF NIEGLLAKDI IQSRAGPSSL GFSPDMSVGY PSLHPSQPGL  480
VQAALPVMGN TSDVIRRTLS SQFTPMNGGY KEPNQLSNAW EDDLHNVVQM NYGTGAPSDS  540
QDVNGSLPSG HLKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	302	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-140	bHLH family protein