PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293454.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 400aa MW: 45839.4 Da PI: 4.5405

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.2	3.5e-35	15	107	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk ye+++de+++++isws+n++sf+++d++ef+ ++LpkyFkhsnf+SF+RQLn+YgF+k+++++ weF+++ F +g+k+ll++ XP_021293454.1 15 FLKKSYEMVDDEATDSVISWSQNSDSFIIWDMTEFSIHLLPKYFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQKDLLKN 100 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i r+k + XP_021293454.1 101 IARRKYS 107 *9865 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MVKPSENGSQ SIAPFLKKSY EMVDDEATDS VISWSQNSDS FIIWDMTEFS IHLLPKYFKH 60 SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKYSQGS EQRKSLQQQP 120 PQQQENFVGS CENNENVGLW KEVENLKTDK NALMQELVKL RQHQETADNK MLLLKDRLHG 180 MEKSQQQLLS FLVMAMQSPG FLVQLIQPNE NNWRMAEASN MLEQVPEDGE SVPFDHLIVR 240 YQPPIDGTSK PVLTPMVDSE NPHESDNSSD ATKDFWMNID FVKVLMDESH IPFIPPDLQD 300 DGAWEKLLLA NTFVENNDDG NLDKEGPVNS GMEMEVTGSG THLEKSRNFE LLIQNMGKSQ 360 NLEIQPLVNG SQLENYQDFE LLTEQMGHLT SKSTKLQGTP

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MVKPSENGSQ SIAPFLKKSY EMVDDEATDS VISWSQNSDS FIIWDMTEFS IHLLPKYFKH  60
SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRGQKDLLKN IARRKYSQGS EQRKSLQQQP  120
PQQQENFVGS CENNENVGLW KEVENLKTDK NALMQELVKL RQHQETADNK MLLLKDRLHG  180
MEKSQQQLLS FLVMAMQSPG FLVQLIQPNE NNWRMAEASN MLEQVPEDGE SVPFDHLIVR  240
YQPPIDGTSK PVLTPMVDSE NPHESDNSSD ATKDFWMNID FVKVLMDESH IPFIPPDLQD  300
DGAWEKLLLA NTFVENNDDG NLDKEGPVNS GMEMEVTGSG THLEKSRNFE LLIQNMGKSQ  360
NLEIQPLVNG SQLENYQDFE LLTEQMGHLT SKSTKLQGTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-116	HSF family protein