PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293441.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HD-ZIP

Protein Properties

Length: 319aa MW: 35885.5 Da PI: 4.2405

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	85	139	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t++q++ Le+ Fe ++++ e++ ++Ak+lgL+ rqV +WFqNrRa+ k+ XP_021293441.1 85 KKRRLTATQVQFLESSFEVENKLEPERKVQIAKELGLQPRQVAIWFQNRRARFKN 139 56689***********************************************995 PP
2	HD-ZIP_I/II	127	7.9e-41	85	174	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE+sFe e+kLeperKv++a+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++yd+lk++ ++L ke+e+L++e+ XP_021293441.1 85 KKRRLTATQVQFLESSFEVENKLEPERKVQIAKELGLQPRQVAIWFQNRRARFKNKQLEKDYDSLKASYDELKTDYDNLLKEKEDLENEV 174 9*************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MEGGKICGGS NMNALIHSEQ LSCSSEVMES LWIPSSTSAL RGQKPIINFE NVSGAETTDM 60 LSFQPLDKEE SGDDDFDGSY HPPGKKRRLT ATQVQFLESS FEVENKLEPE RKVQIAKELG 120 LQPRQVAIWF QNRRARFKNK QLEKDYDSLK ASYDELKTDY DNLLKEKEDL ENEVLALKEK 180 LLIREEGMET LESLDAINSS NAESKKPNCD TSPENVSHVP LVACKQEEAC SAKSDVFDSD 240 SPRYTDGNHS SLIEPADSSN VFEPDQSDFS QDEEDNLSKS LLHPPFFPKF EVDCYYDAPA 300 SSCNFALPGE DQSFWSSLY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARFKNKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-37	HD-ZIP family protein