PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293418.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family BBR-BPC
Protein Properties Length: 282aa    MW: 31434.1 Da    PI: 10.2867
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind345.99.7e-10612821301
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 
                     mddd+ + rn+gyyep+  lk +lglqlmss+aerd+k     r+ nl + +++aa+++rd         m++  rd+++++        ++k++
  XP_021293418.1   1 MDDDALNMRNWGYYEPS--LKGHLGLQLMSSMAERDTKSfipgRDPNL-MVTPNAAFHPRDcvvseapipMNY-VRDSWISQ--------REKFF 83 
                     9***9999*******99..*******************99********.************************.9*******........789** PP

       GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177
                     ++l+++       ++++++l++t+ ++sl       l++++   +++e   +  + e+++++ke    kkrq ++ pk++kakk++k    +k++
  XP_021293418.1  84 NMLPAT-------APNYGILPETSAAHSLPI-----LQPPPDSSSRNE-RVVGRV-EEPSVNKEGVPLKKRQGGAAPKTPKAKKPRK----PKDN 160
                     ***954.......4689**********9988.....777776644444.334444.45677777777888999999*****999999....3334 PP

       GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
                     +++    +r+k  kks+d+ +ng ++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgafkk+LekL
  XP_021293418.1 161 SNSTV--QRVKPAKKSMDIKINGYDMDISGIPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKL 253
                     44444..689************************************************************************************* PP

       GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     aae y+++np+DL++hWA+HGtnkfvtir
  XP_021293418.1 254 AAENYNFNNPIDLRTHWARHGTNKFVTIR 282
                     ****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MDDDALNMRN WGYYEPSLKG HLGLQLMSSM AERDTKSFIP GRDPNLMVTP NAAFHPRDCV  60
VSEAPIPMNY VRDSWISQRE KFFNMLPATA PNYGILPETS AAHSLPILQP PPDSSSRNER  120
VVGRVEEPSV NKEGVPLKKR QGGAAPKTPK AKKPRKPKDN SNSTVQRVKP AKKSMDIKIN  180
GYDMDISGIP IPVCSCTGSP QQCYRWGCGG WQSACCTTNV SMYPLPMSTK RRGARIAGRK  240
MSQGAFKKVL EKLAAENYNF NNPIDLRTHW ARHGTNKFVT IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.11e-109BBR-BPC family protein