PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293389.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 486aa MW: 55048 Da PI: 8.6183

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	306	348	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR++i++++++Lr l+ k + K++ +i A+eYI L XP_021293389.1 306 TIERNRRKKIKDGLFKLRALVLKiS------KMDRTAIPIDAIEYIGTL 348 69*********************66......999999999999999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MTGFERAVEW LKPFVDSKAW YFYVVWKLGD DPSKFIEWKD CCCSGGVNVK VEREELQHSS 60 PLCRDAHFQH SIRLKACEAL SCFLFFMSLY AGEIRIHGKV AMSNQPKWVN HANASGSRSS 120 HDTMGTQFLI PVLGSLIELS VSKHIPKDQS IIELVTTQCN ALLEPEVMTT DSYAKAKIDK 180 WYLKTFGTDF HNLPFPISLS TFIPRMQAIP PISNSNSXPI LDGSSSGSSP LIEHPPFALG 240 STYISQDEQL KQLVGTYHGK KRLRCSKNVS EQKAGFIVDR KNKSVEDIIG TTKQLEKENY 300 HSKNLTIERN RRKKIKDGLF KLRALVLKIS KMDRTAIPID AIEYIGTLLE EEKKLXEELR 360 KIEEEDCEKC NAXLKCAKLD KLHKDNMSAI TFGLAKMPKN KVHVEVNQIT KIEFLIKLCY 420 EHKQGGFAKL MLCIDSLGLQ VIDANVTTFN GKVLSIFKVE GFSVPEIERL VDRPNKLEKS 480 NSCLNI

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MTGFERAVEW LKPFVDSKAW YFYVVWKLGD DPSKFIEWKD CCCSGGVNVK VEREELQHSS  60
PLCRDAHFQH SIRLKACEAL SCFLFFMSLY AGEIRIHGKV AMSNQPKWVN HANASGSRSS  120
HDTMGTQFLI PVLGSLIELS VSKHIPKDQS IIELVTTQCN ALLEPEVMTT DSYAKAKIDK  180
WYLKTFGTDF HNLPFPISLS TFIPRMQAIP PISNSNSXPI LDGSSSGSSP LIEHPPFALG  240
STYISQDEQL KQLVGTYHGK KRLRCSKNVS EQKAGFIVDR KNKSVEDIIG TTKQLEKENY  300
HSKNLTIERN RRKKIKDGLF KLRALVLKIS KMDRTAIPID AIEYIGTLLE EEKKLXEELR  360
KIEEEDCEKC NAXLKCAKLD KLHKDNMSAI TFGLAKMPKN KVHVEVNQIT KIEFLIKLCY  420
EHKQGGFAKL MLCIDSLGLQ VIDANVTTFN GKVLSIFKVE GFSVPEIERL VDRPNKLEKS  480
NSCLNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	5e-63	bHLH family protein