PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293345.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 822aa MW: 90500.3 Da PI: 6.7956

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.7e-07	147	168	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C ff++ G C GdrC F Hg XP_021293345.1 147 VPCIFFQK-GLCLKGDRCAFLHG 168 69****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence
MKEPAMVAAT QQQQQQQLQQ QQQQQQQAAA AAGATKTSAE EEALKRNTDC VYFLASPLTC 60 KKGSECEYRH SEYARVNPRD CYFWLNGNCL NPKCGFRHPP LDGLLGTQVA APAGSSISSS 120 QIAATPTPAA HTLYNQGASY NSSKQAVPCI FFQKGLCLKG DRCAFLHGST TNNKASQPAA 180 ATPATEPHSL KKAFGALETS QLQKFPPSNV SKTVGASLEG KPALKVETVS ARAGAGIERS 240 VPRPAGSDEE LPRHKGANIT QVVNGGSVSR SNRLHQAHAP VEQTFHAGKD TDEFLRESSP 300 GFDVLVDDEL RDSDFYHGED QYGGTGGHEG RNVSEYDIGR SANYDAMADV DREMFRDARG 360 YDSFDHVQGY YGWDQQRASS ERISLGPSTL ERRGYSIADS PDHVEESDLR YRLSKHRRFN 420 GLRSVVSHDH ALENHEEEQN YRASLRDSHH LPAHESSLSS RLRGRIKLPG RSLVNGTDLR 480 SEREIERGRN WGQLSPGKPQ TSSHQGRLRD RIKGRVEGEY NNKEGRNFRG PRIKRDIMDE 540 SNANFAGPKS LAELKVGKNT ENKEQQSLGK RKNIEEYQQT EGDLSFEGPM PLSEILKRKR 600 QSGAAAYGSG IAPVNKEDIN QKQSKESLIG SSTNTVVLPT LEEANKKEES KSGIAESGTT 660 EIVHGESSQL RNANDGKMGK GQISENFLLS QNFRTHDGVL SLAQSVIDLL YHFFPSFVDI 720 LSPETSLIYG EAPILLESEN EDNAIATIFR NHGNVGGHMV GFGAEQVILV RDDPAKNEIS 780 KYVGKQALVL TIVECKGLEF QFITFKESVE SCICIHEEAR LA

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence

MKEPAMVAAT QQQQQQQLQQ QQQQQQQAAA AAGATKTSAE EEALKRNTDC VYFLASPLTC  60
KKGSECEYRH SEYARVNPRD CYFWLNGNCL NPKCGFRHPP LDGLLGTQVA APAGSSISSS  120
QIAATPTPAA HTLYNQGASY NSSKQAVPCI FFQKGLCLKG DRCAFLHGST TNNKASQPAA  180
ATPATEPHSL KKAFGALETS QLQKFPPSNV SKTVGASLEG KPALKVETVS ARAGAGIERS  240
VPRPAGSDEE LPRHKGANIT QVVNGGSVSR SNRLHQAHAP VEQTFHAGKD TDEFLRESSP  300
GFDVLVDDEL RDSDFYHGED QYGGTGGHEG RNVSEYDIGR SANYDAMADV DREMFRDARG  360
YDSFDHVQGY YGWDQQRASS ERISLGPSTL ERRGYSIADS PDHVEESDLR YRLSKHRRFN  420
GLRSVVSHDH ALENHEEEQN YRASLRDSHH LPAHESSLSS RLRGRIKLPG RSLVNGTDLR  480
SEREIERGRN WGQLSPGKPQ TSSHQGRLRD RIKGRVEGEY NNKEGRNFRG PRIKRDIMDE  540
SNANFAGPKS LAELKVGKNT ENKEQQSLGK RKNIEEYQQT EGDLSFEGPM PLSEILKRKR  600
QSGAAAYGSG IAPVNKEDIN QKQSKESLIG SSTNTVVLPT LEEANKKEES KSGIAESGTT  660
EIVHGESSQL RNANDGKMGK GQISENFLLS QNFRTHDGVL SLAQSVIDLL YHFFPSFVDI  720
LSPETSLIYG EAPILLESEN EDNAIATIFR NHGNVGGHMV GFGAEQVILV RDDPAKNEIS  780
KYVGKQALVL TIVECKGLEF QFITFKESVE SCICIHEEAR LA