PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293331.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 428aa MW: 46850.1 Da PI: 5.8946

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.5	8.5e-06	2	34	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 e+ C+ ++ ++ ++C+++ lC +C H+ XP_021293331.1 2 EPLCDFCGGVRAVIYCKSDAARLCLSCDGCVHS 34 689****99**************999885 PP
2	zf-B_box	16.1	2.4e-05	46	74	4	32
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClle 32 C++++++++ C d + lC+ C + XP_021293331.1 46 LLCEKCNSQPAVVRCLDEKLSLCQACDWN 74 57************************865 PP
3	CCT	61.9	2e-21	372	415	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_021293331.1 372 RDKAKMRYNEKKKTRIFGKQIRYASRKARADTRKRVKGRFVKAG 415 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEPLCDFCGG VRAVIYCKSD AARLCLSCDG CVHSANLLSR RHARSLLCEK CNSQPAVVRC 60 LDEKLSLCQA CDWNSNSCSS FRHRREALNC YTGCPSLAEF RRIWSSVLDA SSSSAFDAGL 120 PVGSLPANDN CIINCLNQRE PGGAFGLDGT KLNEPDPCPK LEPWMGPSSL IPTNANYMPY 180 CRNQEPLFSE ESNISKGCSD LKDFKLLDGD DLCEGINMND VQLNFETADE IFGCSQGQNR 240 SQFDNVGTEG LLMEKNITLT ESDVPIEKSL EASSLGQKGC MAFPCSQVGG SESLMAAMTG 300 TSNCMLMNRG CNRNINLGYP ARQIPSTIAL SLSNIAGENG AADFQDCGLS PVFLTGESPW 360 ESNMEASCPL ARDKAKMRYN EKKKTRIFGK QIRYASRKAR ADTRKRVKGR FVKAGEAYDY 420 DPLVARNF

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEPLCDFCGG VRAVIYCKSD AARLCLSCDG CVHSANLLSR RHARSLLCEK CNSQPAVVRC  60
LDEKLSLCQA CDWNSNSCSS FRHRREALNC YTGCPSLAEF RRIWSSVLDA SSSSAFDAGL  120
PVGSLPANDN CIINCLNQRE PGGAFGLDGT KLNEPDPCPK LEPWMGPSSL IPTNANYMPY  180
CRNQEPLFSE ESNISKGCSD LKDFKLLDGD DLCEGINMND VQLNFETADE IFGCSQGQNR  240
SQFDNVGTEG LLMEKNITLT ESDVPIEKSL EASSLGQKGC MAFPCSQVGG SESLMAAMTG  300
TSNCMLMNRG CNRNINLGYP ARQIPSTIAL SLSNIAGENG AADFQDCGLS PVFLTGESPW  360
ESNMEASCPL ARDKAKMRYN EKKKTRIFGK QIRYASRKAR ADTRKRVKGR FVKAGEAYDY  420
DPLVARNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-102	CO-like family protein