PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021293289.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 309aa MW: 35437.1 Da PI: 8.2128

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021293289.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.4	2.1e-19	43	131	2	86
trihelix 2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt qe+l+Li+a+r ++er + +k + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ +++ s+ss ++p + ++e XP_021293289.1 43 WTIQETLTLITAKRLDDERRTKpstsspSKPGELRWKWVENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRHYQSQ--SQSSDHFPSYWSME 131 ************77666664333323468899************************************8..688888***998 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MSNPPPPLPP TLXPPTTTIT AATTVTPTPP TTTTNREYRK GNWTIQETLT LITAKRLDDE 60 RRTKPSTSSP SKPGELRWKW VENYCWDHGC FRSQNQCNDK WDNLLRDYKK VRHYQSQSQS 120 SDHFPSYWSM ERHQRKFHNL PTNMSPEVFE ALNDVLQRKY STQQQQQSTG SIQQQQQKQP 180 CISQSSEQVA VRTDQQAPEV EAPVPVSEES DSSETESSEN LGSETKRKKV RKIGSSIMQS 240 ASVLAQTLKS CEEKKEKRHQ EVMELEQRRL QIEETRNEVN RKGITDLVAA MTNLSGAIQS 300 LIANHYDQT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	257	KRKKVRKIGSSIMQSASVLAQTLKSCEEKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-43	Trihelix family protein