PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021293090.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GRAS
Protein Properties Length: 614aa    MW: 67161.8 Da    PI: 5.6311
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021293090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.73e-1392456041374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++++  la +++ +m+++a+yf+eALa+r++r        l p++  +++ s++l+++  f+e++P+lkf+h
  XP_021293090.1 245 LVHALMACAEAVQQNNLNLAEALVKQVGFLAISQAGAMRKVATYFAEALARRIYR--------LYPQNPLDHSLSDVLHMH--FYETCPYLKFAH 329
                     689****************************************************........445555556688888885..************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa R +gpp++R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+
  XP_021293090.1 330 FTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRVGGPPTFRLTGIGPPSHDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLD 424
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p   Ea+aVn+v++lh+ll++++++++    vL++vk+++P++v++veqea+hn + Fl+rf+e+l+yys+lfdsle ++   s++++
  XP_021293090.1 425 ASMLDLRPseVEAVAVNSVFELHKLLARPGAIDK----VLSVVKQMKPEIVTIVEQEANHNVPVFLDRFTESLHYYSTLFDSLEGSV---SSQDK 512
                     ********8889**************99999988....************************************************7...9999* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lg++i+nvvaceg +r+erhe+l++Wr+rl++aGF pv+l+++a kqa++ll+ ++ +dgy vee+ g+l+lgW++rpL+++SaW+
  XP_021293090.1 513 VMSEVYLGKQICNVVACEGVDRVERHEKLAQWRNRLGAAGFAPVHLGSNAFKQASMLLALFAgGDGYGVEENTGCLMLGWHSRPLIATSAWK 604
                     *******************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    
MKRDHHHLQP NPDPSTVGSS SVCGGSTTGK AKMWQEEAAQ QDCGMDELLA VLGYKVKTSD  60
MAEVAQKLEQ LEEFMCNVQD DGISHLASET VHYNPSDLST WLESMLSELN PPSAFDPVVA  120
AGPAAAALDD SFLGPAESST LTTLDFDNNN QKDQKKGQQL FEEASCSDYD LKAIPGKAIY  180
SQKAQTHDSS SSSTQNNVVK SEKRLKSTSG SHSDIYPPPA SSYGIPAEST RPVVLVDSQE  240
NGIRLVHALM ACAEAVQQNN LNLAEALVKQ VGFLAISQAG AMRKVATYFA EALARRIYRL  300
YPQNPLDHSL SDVLHMHFYE TCPYLKFAHF TANQAILEAF EGKKRVHVID FSMNQGMQWP  360
ALMQALALRV GGPPTFRLTG IGPPSHDNSD HLQEVGWKLA QLAETIHVEF EYRGFVANSL  420
ADLDASMLDL RPSEVEAVAV NSVFELHKLL ARPGAIDKVL SVVKQMKPEI VTIVEQEANH  480
NVPVFLDRFT ESLHYYSTLF DSLEGSVSSQ DKVMSEVYLG KQICNVVACE GVDRVERHEK  540
LAQWRNRLGA AGFAPVHLGS NAFKQASMLL ALFAGGDGYG VEENTGCLML GWHSRPLIAT  600
SAWKVANKTT ATAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein