PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292895.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 703aa MW: 75782.5 Da PI: 8.4489

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.4	4.6e-29	94	178	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ ++r++ k+plWe+vs+k++e g +rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea XP_021292895.1 94 RWPRQETIALLKIRSDMDAAFRDATVKGPLWEDVSRKLAELGHKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSQLEA 178 8*******************************************************************866665..*****85 PP
2	trihelix	107.5	9.1e-34	529	614	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a XP_021292895.1 529 RWPKAEVFALINLRSGLESRYQEAGPKGPLWEEISAGMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 614 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MQQGGGGGHQ SQYGEMGAPT TAVAATTVAV SSSHMVSEQS EQLVEAASPI SSRPPATGNL 60 DEFMRLASGG GDDGGDEGDR AGGGGGAGVA SGNRWPRQET IALLKIRSDM DAAFRDATVK 120 GPLWEDVSRK LAELGHKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY KFFSQLEALH 180 TTSSATAAAT LSTPVTPVTA ASAPSLDVAP VSVGIPLPIP SVRIPPATIP MTSSMLAVPG 240 SAPASIPVPP VATAPASGHP ITTTATPFGI SFSSNSSSSS QGFEDDDDDD NEEDELGGEP 300 SNMAGTSRKR KRQSSRGGGS TTRRMMEFFE GLMKQVMQKQ EAMQQRFLEA IEKREQDRMI 360 REEAWKRQEM ARLTREHELM AQERAIAASR DAAIISFLQK ITGQTVQLPT TVTVSAAPPP 420 PTQPAVPVVP PPASIPISAS PLHHPPSLPQ QQQQRSSQQQ QQSVQPHHQH QQQPQAVHQQ 480 QHQAQPQNTE IVRHHQQPIS SDVVMAIPEQ QVPPQEIGGS GSLEPASSRW PKAEVFALIN 540 LRSGLESRYQ EAGPKGPLWE EISAGMSRMG YKRSAKRCKE KWENINKYFK KVKESNKKRP 600 EDAKTCPYFH QLDALYRKKM LGGGTSGGSS SLSDQNRPEE ETSQQHQDTS DAPPITAAPQ 660 STQPTDQSEN KTGDTADVLT RKEGLPGSFF GEGNGGAAKK KTL

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MQQGGGGGHQ SQYGEMGAPT TAVAATTVAV SSSHMVSEQS EQLVEAASPI SSRPPATGNL  60
DEFMRLASGG GDDGGDEGDR AGGGGGAGVA SGNRWPRQET IALLKIRSDM DAAFRDATVK  120
GPLWEDVSRK LAELGHKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY KFFSQLEALH  180
TTSSATAAAT LSTPVTPVTA ASAPSLDVAP VSVGIPLPIP SVRIPPATIP MTSSMLAVPG  240
SAPASIPVPP VATAPASGHP ITTTATPFGI SFSSNSSSSS QGFEDDDDDD NEEDELGGEP  300
SNMAGTSRKR KRQSSRGGGS TTRRMMEFFE GLMKQVMQKQ EAMQQRFLEA IEKREQDRMI  360
REEAWKRQEM ARLTREHELM AQERAIAASR DAAIISFLQK ITGQTVQLPT TVTVSAAPPP  420
PTQPAVPVVP PPASIPISAS PLHHPPSLPQ QQQQRSSQQQ QQSVQPHHQH QQQPQAVHQQ  480
QHQAQPQNTE IVRHHQQPIS SDVVMAIPEQ QVPPQEIGGS GSLEPASSRW PKAEVFALIN  540
LRSGLESRYQ EAGPKGPLWE EISAGMSRMG YKRSAKRCKE KWENINKYFK KVKESNKKRP  600
EDAKTCPYFH QLDALYRKKM LGGGTSGGSS SLSDQNRPEE ETSQQHQDTS DAPPITAAPQ  660
STQPTDQSEN KTGDTADVLT RKEGLPGSFF GEGNGGAAKK KTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	145	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	4e-49	Trihelix family protein