PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292803.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 381aa MW: 43680 Da PI: 6.5218

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.9	2.4e-27	72	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e XP_021292803.1 72 WVQDETRSLISFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 153 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MYLSEKPRPI DLYKEEGPAT ARDMIIEVTT NGDLPPHHHP PPLQQQQQQM ILGDSSGEDP 60 EVKAPKKRAE TWVQDETRSL ISFRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC 120 TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP PKVDSFMHFA 180 DKGFEDTGIS FGPVEASGRP TLNLERRLDH DGHPLAITAA DAVAASGVPP WNWRETPGNG 240 GDCQSYGGRV ITVKFGDYTR RIGIDGTADA IREAIKSAFR LRTRRAFWLE DEDHIVRSLD 300 REMPLGIYTL HLDEGLAIKV CLYDESEHIP VHTEEKIFYT EDDYREYLAR RGYTGLREID 360 GYRNVDNMDD LRTNAIYRGV S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MYLSEKPRPI DLYKEEGPAT ARDMIIEVTT NGDLPPHHHP PPLQQQQQQM ILGDSSGEDP  60
EVKAPKKRAE TWVQDETRSL ISFRREMDGL FNTSKSNKHL WEQISAKMRE KGFDRSPTMC  120
TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP PKVDSFMHFA  180
DKGFEDTGIS FGPVEASGRP TLNLERRLDH DGHPLAITAA DAVAASGVPP WNWRETPGNG  240
GDCQSYGGRV ITVKFGDYTR RIGIDGTADA IREAIKSAFR LRTRRAFWLE DEDHIVRSLD  300
REMPLGIYTL HLDEGLAIKV CLYDESEHIP VHTEEKIFYT EDDYREYLAR RGYTGLREID  360
GYRNVDNMDD LRTNAIYRGV S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein