PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292769.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79088.7 Da    PI: 5.9518
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.7e-2058113156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  XP_021292769.1  58 KKRYHRHTQHQIHEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 113
                     688999***********************************************999 PP
2START2275.7e-712414611206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ +ep+W++s     +++n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d+  qW++ +     ka+tl
  XP_021292769.1 241 ELAVAAMEELIRMAQMGEPLWMTSLdcttSMLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVH-QWSTVFSgivsKATTL 334
                     57899**************************************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+    vR++++pSg+li++++ng+skvtwvehv
  XP_021292769.1 335 DVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNLRPSPT----VRCRRRPSGCLIQEMPNGYSKVTWVEHV 425
                     ************************************************************996....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  XP_021292769.1 426 EVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 461
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MFQPNMMEGQ LHPLEMTQNT SESEIARMRD EEFDSTTKSG SDNHEGASGD DQDPRPKKKR  60
YHRHTQHQIH EMEAFFKECP HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKTQHERQE  120
NTQLRAENEK LRADNMRFRE ALSTASCPNC GGPTAVGQMS FDEHHLRLEN ARLREEIDRI  180
SAIAAKYVGK PVVNYPLLSS PMPPRPLDFG AQPGTGEMYG AGDLLRSISA PSEADKPMII  240
ELAVAAMEEL IRMAQMGEPL WMTSLDCTTS MLNEEEYIRT FPRGIGPKPT GFKCEASRET  300
AVVIMNHINL VEILMDVHQW STVFSGIVSK ATTLDVLSTG VAGNYNGALQ VMTAEFQVPS  360
PLVPTRESYY VRYCKQHAEG TWAVVDVSLD NLRPSPTVRC RRRPSGCLIQ EMPNGYSKVT  420
WVEHVEVDDR GVHNLYKQLV SSGHAFGAKR WIATLDRQCE RLASVMATNI TTGDVGVITN  480
QDGRKSMLKL AERMVISFCA GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL  540
SAATSFWLPV SPKRVFDFLR DENSRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS  600
ANSSQSNMLI LQESCADPTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGTP  660
ASAGGIGDAG SAGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein