PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292768.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 750aa    MW: 81872.9 Da    PI: 6.0542
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292768.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37e-2090145156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  XP_021292768.1  90 KKRYHRHTQHQIHEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 145
                     688999***********************************************999 PP
2START226.86.2e-712734931206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ +ep+W++s     +++n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d+  qW++ +     ka+tl
  XP_021292768.1 273 ELAVAAMEELIRMAQMGEPLWMTSLdcttSMLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVH-QWSTVFSgivsKATTL 366
                     57899**************************************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+    vR++++pSg+li++++ng+skvtwvehv
  XP_021292768.1 367 DVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNLRPSPT----VRCRRRPSGCLIQEMPNGYSKVTWVEHV 457
                     ************************************************************996....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  XP_021292768.1 458 EVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 493
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    
MPAGLMIPAR NMPSMISGNG NVGGFGTSSG LTLGQPNMME GQLHPLEMTQ NTSESEIARM  60
RDEEFDSTTK SGSDNHEGAS GDDQDPRPKK KRYHRHTQHQ IHEMEAFFKE CPHPDDKQRK  120
ELGRELGLEP LQVKFWFQNK RTQMKTQHER QENTQLRAEN EKLRADNMRF REALSTASCP  180
NCGGPTAVGQ MSFDEHHLRL ENARLREEID RISAIAAKYV GKPVVNYPLL SSPMPPRPLD  240
FGAQPGTGEM YGAGDLLRSI SAPSEADKPM IIELAVAAME ELIRMAQMGE PLWMTSLDCT  300
TSMLNEEEYI RTFPRGIGPK PTGFKCEASR ETAVVIMNHI NLVEILMDVH QWSTVFSGIV  360
SKATTLDVLS TGVAGNYNGA LQVMTAEFQV PSPLVPTRES YYVRYCKQHA EGTWAVVDVS  420
LDNLRPSPTV RCRRRPSGCL IQEMPNGYSK VTWVEHVEVD DRGVHNLYKQ LVSSGHAFGA  480
KRWIATLDRQ CERLASVMAT NITTGDVGVI TNQDGRKSML KLAERMVISF CAGVSASTAH  540
TWTTLSGTGA DDVRVMTRKS VDDPGRPPGI VLSAATSFWL PVSPKRVFDF LRDENSRSEW  600
DILSNGGVVQ EMAHIANGRD TGNCVSLLRS ANSSQSNMLI LQESCADPTA SFVIYAPVDI  660
VAMNVVLNGG DPDYVALLPS GFAILPDGTP ASAGGIGDAG SAGSLLTVAF QILVDSVPTA  720
KLSLGSVATV NNLIACTVER IKASLSCENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0HD-ZIP family protein