PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292765.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 756aa    MW: 82605.8 Da    PI: 6.0542
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292765.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.1e-2094149156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  XP_021292765.1  94 KKRYHRHTQHQIHEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 149
                     688999***********************************************999 PP
2START226.86.3e-712774971206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+++a+ +ep+W++s     +++n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d+  qW++ +     ka+tl
  XP_021292765.1 277 ELAVAAMEELIRMAQMGEPLWMTSLdcttSMLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVH-QWSTVFSgivsKATTL 370
                     57899**************************************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +v+s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+    vR++++pSg+li++++ng+skvtwvehv
  XP_021292765.1 371 DVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNLRPSPT----VRCRRRPSGCLIQEMPNGYSKVTWVEHV 461
                     ************************************************************996....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  XP_021292765.1 462 EVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 497
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    
MPAGLMIPAR NMPSMISGNG NVGGFGTSSG LTLGQIMFQP NMMEGQLHPL EMTQNTSESE  60
IARMRDEEFD STTKSGSDNH EGASGDDQDP RPKKKRYHRH TQHQIHEMEA FFKECPHPDD  120
KQRKELGREL GLEPLQVKFW FQNKRTQMKT QHERQENTQL RAENEKLRAD NMRFREALST  180
ASCPNCGGPT AVGQMSFDEH HLRLENARLR EEIDRISAIA AKYVGKPVVN YPLLSSPMPP  240
RPLDFGAQPG TGEMYGAGDL LRSISAPSEA DKPMIIELAV AAMEELIRMA QMGEPLWMTS  300
LDCTTSMLNE EEYIRTFPRG IGPKPTGFKC EASRETAVVI MNHINLVEIL MDVHQWSTVF  360
SGIVSKATTL DVLSTGVAGN YNGALQVMTA EFQVPSPLVP TRESYYVRYC KQHAEGTWAV  420
VDVSLDNLRP SPTVRCRRRP SGCLIQEMPN GYSKVTWVEH VEVDDRGVHN LYKQLVSSGH  480
AFGAKRWIAT LDRQCERLAS VMATNITTGD VGVITNQDGR KSMLKLAERM VISFCAGVSA  540
STAHTWTTLS GTGADDVRVM TRKSVDDPGR PPGIVLSAAT SFWLPVSPKR VFDFLRDENS  600
RSEWDILSNG GVVQEMAHIA NGRDTGNCVS LLRVNSANSS QSNMLILQES CADPTASFVI  660
YAPVDIVAMN VVLNGGDPDY VALLPSGFAI LPDGTPASAG GIGDAGSAGS LLTVAFQILV  720
DSVPTAKLSL GSVATVNNLI ACTVERIKAS LSCENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein