PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292759.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 655aa MW: 72562.4 Da PI: 5.1651

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.1	9.6e-55	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeel+++yL+ kv+g++ e+ evi+e+d++k+ePwdLp + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++ XP_021292759.1 9 LPLGFRFRPTDEELINHYLRSKVNGRHSEV-EVIPEIDVCKWEPWDLPglSVIKSDDPEWFFFCPRDRKYPNGHRSNRATDKGYWKATGKDRTIK 102 699**********************999.99***********6447888888*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k++ +g+kktLvfykgrapkg++t+W+mheyr+ XP_021292759.1 103 S-KKSFIGMKKTLVFYKGRAPKGQRTNWIMHEYRA 136 .8899**************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MAVLTMEALP LGFRFRPTDE ELINHYLRSK VNGRHSEVEV IPEIDVCKWE PWDLPGLSVI 60 KSDDPEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSFIGM KKTLVFYKGR 120 APKGQRTNWI MHEYRATAKD LDGTGPGQGA FVLCRLFHKL EEKNDIVKYE EVEQTGYSPT 180 MTKSSPDDTS SDLLQDTVSS DTQAQKPDNV MQNGQVTGDS SCNSHMTSDA EDHATEETAV 240 EEYPLLGGNS NLYEPNFGEI DHKVFSPMNS HFFEDLPVCM DSPYASDFGH DQNGFYFQDG 300 TGEQDVSFSM LDEVLNNHDG SCAASNSQKN LVAGTEMPLS GNGFISKTIP PEASYIRENG 360 TYSETDTEMA QLQYESEVGA ARWFGGHVDN KYSVQMQTSF DSGHTQRALY DQAFRIGNND 420 SLGNCSVGQA TSYTDSAMGS INNLQQLTSL KNHMNNGGNL GGGTGMNTRT FEPPQQPNSD 480 NFATLGTGTG IKIRTRAPQQ RANSDNFVNQ GTAPRRIRLQ MKLSNGPMKV SAGCVDDGKM 540 RSTGLGEEEE VQSALTEITE AEATGQTPSS DESEKESQLL KFDGSGNIAE ESCTKLRQRV 600 KQDGEPRSSQ IGPSVHSKAA PAHHRFSSLS ILVFTVFFIT ILLALFMGIW RCLRF

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MAVLTMEALP LGFRFRPTDE ELINHYLRSK VNGRHSEVEV IPEIDVCKWE PWDLPGLSVI  60
KSDDPEWFFF CPRDRKYPNG HRSNRATDKG YWKATGKDRT IKSKKSFIGM KKTLVFYKGR  120
APKGQRTNWI MHEYRATAKD LDGTGPGQGA FVLCRLFHKL EEKNDIVKYE EVEQTGYSPT  180
MTKSSPDDTS SDLLQDTVSS DTQAQKPDNV MQNGQVTGDS SCNSHMTSDA EDHATEETAV  240
EEYPLLGGNS NLYEPNFGEI DHKVFSPMNS HFFEDLPVCM DSPYASDFGH DQNGFYFQDG  300
TGEQDVSFSM LDEVLNNHDG SCAASNSQKN LVAGTEMPLS GNGFISKTIP PEASYIRENG  360
TYSETDTEMA QLQYESEVGA ARWFGGHVDN KYSVQMQTSF DSGHTQRALY DQAFRIGNND  420
SLGNCSVGQA TSYTDSAMGS INNLQQLTSL KNHMNNGGNL GGGTGMNTRT FEPPQQPNSD  480
NFATLGTGTG IKIRTRAPQQ RANSDNFVNQ GTAPRRIRLQ MKLSNGPMKV SAGCVDDGKM  540
RSTGLGEEEE VQSALTEITE AEATGQTPSS DESEKESQLL KFDGSGNIAE ESCTKLRQRV  600
KQDGEPRSSQ IGPSVHSKAA PAHHRFSSLS ILVFTVFFIT ILLALFMGIW RCLRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	1e-146	NAC family protein