PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292545.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 431aa MW: 48232.9 Da PI: 5.1204

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.8	2.1e-08	16	57	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC+ C ++ H+ H+ XP_021292545.1 16 ARACDGCLRKRARWYCAADDAFLCQGCDTSVHSAnqlasrHE 57 578*****************************6566666666 PP
2	CCT	67.2	4.6e-23	377	420	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY++Kr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_021292545.1 377 REARVSRYRDKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 420 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MTTDKKAANA MGGKTARACD GCLRKRARWY CAADDAFLCQ GCDTSVHSAN QLASRHERAR 60 LETASFSKFS ASVMNRTNQD APPAWHQGFT RKARTPRQNK SMLGQQKNEG KVFSLNPLDP 120 VVPEIGIEDG SVDENEEQRL CRVPVLDPFA AELCNMVTSD GDEVAMVNED GNFVIDDYER 180 ERTCELDDGL HGFLPSDMDL ADFAADVESL LGVGLDDDAC CDTKGIDLLH SKGEDESNVL 240 HERKIVKVKD EGELEGITAC CFDSAFDVTR ESLNWSFDYE SRTIGEEEEE KVLPVTETTT 300 MNGEIKAEMK RNMLLRLNYE SVITAWASQG SPWTAGSRPE FNPDDFMGSN LKEGHHLSGG 360 IGGIYSLQGR GNTDGEREAR VSRYRDKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS 420 SFVGTAFPYI N

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MTTDKKAANA MGGKTARACD GCLRKRARWY CAADDAFLCQ GCDTSVHSAN QLASRHERAR  60
LETASFSKFS ASVMNRTNQD APPAWHQGFT RKARTPRQNK SMLGQQKNEG KVFSLNPLDP  120
VVPEIGIEDG SVDENEEQRL CRVPVLDPFA AELCNMVTSD GDEVAMVNED GNFVIDDYER  180
ERTCELDDGL HGFLPSDMDL ADFAADVESL LGVGLDDDAC CDTKGIDLLH SKGEDESNVL  240
HERKIVKVKD EGELEGITAC CFDSAFDVTR ESLNWSFDYE SRTIGEEEEE KVLPVTETTT  300
MNGEIKAEMK RNMLLRLNYE SVITAWASQG SPWTAGSRPE FNPDDFMGSN LKEGHHLSGG  360
IGGIYSLQGR GNTDGEREAR VSRYRDKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS  420
SFVGTAFPYI N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	404	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-100	CO-like family protein