PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292486.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 301aa    MW: 32437 Da    PI: 10.0409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292486.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-14105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   XP_021292486.1 105 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 149
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MPASTCASAS SSAANSTANG GSSGGGEIML FGVRVVVDSM RKSVSMNNLS QYEQPHASNS  60
GNRINEKSNN NNNNKGDDNG TACYASADDA VPQSTGNRER KRGVPWTEEE HKLFLLGLQK  120
VGKGDWRGIS RNFVKTRTPT QVASHAQKYF LRRNNLNRRR RRSSLFDITT DTVAAVPMEE  180
TQVHPQGNTT QPSEINGFPM MPIAFPMTVN PPVPMENLTL GQGNQSNNNN ATAKLIRPVP  240
ISPAPQASDL NLNLNSVVGP SPLSLQLSLQ PDQKDSSSRH SAFQVMPSFS NGDSNSIISV  300
A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.13e-61MYB_related family protein