PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292452.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 437aa MW: 49394.6 Da PI: 6.2983

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.7e-19	195	241	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+q+G + W++Ia++++ gR +kqc++rw+++l XP_021292452.1 195 KGQWTIEEDRLLIQLVEQYGVRKWSLIAQMLP-GRIGKQCRERWHNHL 241 799***************************.***********97 PP
2	Myb_DNA-binding	54.8	2.1e-17	247	289	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd+ l++a+ + G++ W+ Ia++++ gRt++++k++w+ XP_021292452.1 247 KDTWSEEEDKVLIQAHIEIGNK-WAEIAKRLP-GRTENSIKNHWN 289 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MELDVKLREN MATPGPQPMF MKDELFPFET TPSSSSKGYY NLQDIHHLEH HHQVLDVNGS 60 SPNPVFGIQA ACYDPFDAFP YGCSANDVDL YECKPFADNG GAAGHGQVMD NFQGGGGYLN 120 LSQRNSDDVV MGSDSIGYMP FDFQGVKPVN FVVPDEVSSV TAENAYYKKV GMNKNKVLAS 180 TKRTWKGRKK SNVVKGQWTI EEDRLLIQLV EQYGVRKWSL IAQMLPGRIG KQCRERWHNH 240 LRPDIKKDTW SEEEDKVLIQ AHIEIGNKWA EIAKRLPGRT ENSIKNHWNA TKRRQFSKRK 300 CRSKYPRGSI LQEYIKSLNL ESSSSTRYQE KPSTATNAAT ADMNTSTKAP NHQPQALDFC 360 STDRLVPEYD FNEVPDFCFD EKLLQESCSF DSLLDEIPTA PPQVAGAADS MDMALVMKNE 420 VKKELDLVEM ISQQANM

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MELDVKLREN MATPGPQPMF MKDELFPFET TPSSSSKGYY NLQDIHHLEH HHQVLDVNGS  60
SPNPVFGIQA ACYDPFDAFP YGCSANDVDL YECKPFADNG GAAGHGQVMD NFQGGGGYLN  120
LSQRNSDDVV MGSDSIGYMP FDFQGVKPVN FVVPDEVSSV TAENAYYKKV GMNKNKVLAS  180
TKRTWKGRKK SNVVKGQWTI EEDRLLIQLV EQYGVRKWSL IAQMLPGRIG KQCRERWHNH  240
LRPDIKKDTW SEEEDKVLIQ AHIEIGNKWA EIAKRLPGRT ENSIKNHWNA TKRRQFSKRK  300
CRSKYPRGSI LQEYIKSLNL ESSSSTRYQE KPSTATNAAT ADMNTSTKAP NHQPQALDFC  360
STDRLVPEYD FNEVPDFCFD EKLLQESCSF DSLLDEIPTA PPQVAGAADS MDMALVMKNE  420
VKKELDLVEM ISQQANM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-109	MYB family protein