PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292446.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 311aa    MW: 35377.2 Da    PI: 6.9959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-172168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++++G g+W++ a++ g++Rt+k+c++rw++yl
   XP_021292446.1 21 RGPWTLEEDSLLNHYIARHGEGRWNSLAKRAGLRRTGKSCRLRWLNYL 68
                     89********************************************97 PP
2Myb_DNA-binding49.59.4e-1674117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+ l++ ++ ++G++ W++Ia++++ gRt++++k++w++
   XP_021292446.1  74 RGNLTPQEQFLILSLHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MSSLRKSSTS SSEDDAEQLR RGPWTLEEDS LLNHYIARHG EGRWNSLAKR AGLRRTGKSC  60
RLRWLNYLKP DVKRGNLTPQ EQFLILSLHS KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARHLKVDP NSTAFQNVIR CFWIPRLLQK MEGSSSFSSM ASENTTVLQS LDQASQHQAL  180
MTLQQVPGQG PGNLSEAIQN LDHQEQNSDS EHCASSCVSS SESMNNISQI SQFAEYQTSP  240
FRIIGNNDYN NTLAKDCYYD METINLASTS APGDFANPVG DCHMAENNWF SNGFADDLWS  300
MGELWEPRNL N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-77MYB family protein