PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021292357.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 278aa    MW: 31232.8 Da    PI: 6.7963
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021292357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.6e-08166213455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  XP_021292357.1 166 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 213
                     8*************************9....35599999**********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MADFTSDFQS FKQSFSFLDT DPAMESLNQF AELSQGVIDN SALNFQSFLP FSNDSFFSNE  60
APEIPGNNWG ENLPGFIHHS NQSSVVSVAQ PIVTAKTEFH ESKKRKALDV SESSSGNSSS  120
PQVTESGIKR RNNSGRRKRA RSNEKEEEKP KEVVHVRARR GQATDSHSLA ERVRRGKINE  180
RLRCLQDIVP GCYKTMGMAV MLDEIINYVQ SLQNQVEFLS MKLTAASTYY DFNSESDTME  240
RMQRAKAQEA KELDRLMRSE GYVGGLACFH SAAWSSLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129139KRRNNSGRRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-64bHLH family protein