PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021292352.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | MYB | ||||||||
Protein Properties | Length: 945aa MW: 106666 Da PI: 9.3505 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.5e-08 | 217 | 261 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eEd+ l+ v++ G +W Ia + +Rt+ qc r+q XP_021292352.1 217 NPWTAEEDKNLLFIVQEKGISNWFDIAVSLRSNRTPFQCLARYQR 261 58*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 44.1 | 4.8e-14 | 269 | 313 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k XP_021292352.1 269 KGDWTEEEDDQLRIAVEVFGECDWQSVASTLK-GRTGTQCSNRWIK 313 789****************************9.***********87 PP | |||||||
3 | Myb_DNA-binding | 52.5 | 1.2e-16 | 323 | 366 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + XP_021292352.1 323 GRWTHDEDKRLKVAVMLFGPKNWRKIAEVIP-GRTQVQCRERWVN 366 8******************************.***********87 PP | |||||||
4 | Myb_DNA-binding | 51.9 | 1.7e-16 | 375 | 418 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT+eEd++l a++++G W+++a++m+ Rt++qc rw ++ XP_021292352.1 375 GRWTKEEDLRLEAAIEEHGCC-WSKVAACMP-SRTDNQCWRRWKTL 418 89*****************88.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 945 aa Download sequence |
MTDPPLRTPP SPRLLWRIPA ARMIWKFSGV YGVVLRFRWT FVSLCLFSLP AFFLQFLLMT 60 MLKMISRLFA LSRGGFGLIL AMVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS 120 RGERENLVKG IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF 180 LPKVNWDQLA SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF 240 DIAVSLRSNR TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK 300 GRTGTQCSNR WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC 360 RERWVNSLDP ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP 420 KAVPLLQEAR RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR 480 KESRSESEKE NDATLRQFSE QRTRKSCRKG AQACSSEVPG MMHENEAEAA NGHDADRKKR 540 RNPHSGNNNC IEPAQGVAYP KKRKRKPPSG SNNCTESVQD VVIQRKRRRK PPSGNNNCSD 600 SVQDDAVQTE KRKQQSESNK CIEPMQDNSS SHSLSTLCVT TNNEAESFGH SLTIKREKHP 660 KPSPKQCSKK RVHTEFGEEQ SSVCSEDSEF SGATGGAEMM HNNGVEVDIL GVDDASGKKS 720 IAKPGSKRKT CMNLSTSQSS RIISAEDFEN LPSSKKVEKR GNSSLRQHSR SRKSSELSGA 780 KDDITLASFL QDKLKKSIPS FADGDEVKLA GFLRNKSKNR RHQISENAHL SIMKGAEQRD 840 KTNQIQFGLQ HCEAKTNCDG VIPENSMFRS SLKQTIMSSD MNIVGDGIVN DTVACHEVVR 900 EPERIDQDGN CEADGITLVQ LRKRLKKRGP ASSCMRRESE LPSNG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 537 | 566 | RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK |
2 | 538 | 567 | RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK |
3 | 560 | 567 | PKKRKRKP |
4 | 561 | 566 | KKRKRK |
5 | 561 | 590 | KKRKRKPPSGSNNCTESVQDVVIQRKRRRK |
6 | 562 | 591 | KKRKRKPPSGSNNCTESVQDVVIQRKRRRK |
7 | 585 | 614 | RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK |
8 | 585 | 589 | RKRRR |
9 | 586 | 615 | RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK |
10 | 587 | 616 | RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK |
11 | 922 | 928 | RKRLKKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-150 | MYB family protein |