PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292351.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 1174aa MW: 132547 Da PI: 6.8997

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292351.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.8e-08	447	491	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eEd+ l+ v++ G +W Ia + +Rt+ qc r+q XP_021292351.1 447 NPWTAEEDKNLLFIVQEKGISNWFDIAVSLRSNRTPFQCLARYQR 491 58*****************************************96 PP
2	Myb_DNA-binding	43.7	6.2e-14	499	543	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k XP_021292351.1 499 KGDWTEEEDDQLRIAVEVFGECDWQSVASTLK-GRTGTQCSNRWIK 543 789**************************9.*********87 PP
3	Myb_DNA-binding	52.1	1.5e-16	553	596	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + XP_021292351.1 553 GRWTHDEDKRLKVAVMLFGPKNWRKIAEVIP-GRTQVQCRERWVN 596 8****************************.*********87 PP
4	Myb_DNA-binding	51.6	2.2e-16	605	648	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT+eEd++l a++++G W+++a++m+ Rt++qc rw ++ XP_021292351.1 605 GRWTKEEDLRLEAAIEEHGCC-WSKVAACMP-SRTDNQCWRRWKTL 648 89***************88.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1174 aa Download sequence
MSLHDQYDTG KEKEKEEEEV DEEEEEEEEL SVSENDDSFD EDMEALKQAC LRTGADLNDL 60 QIAASDNDRP STSDAAVSSA ALAYSGSEDD MEIFRSIRSR FALSVDVCEP LSIQPPCFLP 120 PISSDDDAED DFETLRIIQR RFRAYSSNDT RGISTEDHIE KTEPIYTTSM PLQDATSNDI 180 CERFQDYEKA GNISHFSSDN VEMQPVGLVQ WDHSHANELS TLADNSSRFP KSAQQLIDAI 240 KKNRSYQKFL RSKLTQIESK IEENKKLKER VKILKDFQVS CKKITGRSLS INKDPRIQLI 300 SARKSRTSKD PEVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS RGERENLVKG 360 IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF LPKVNWDQLA 420 SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF DIAVSLRSNR 480 TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK GRTGTQCSNR 540 WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC RERWVNSLDP 600 ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP KAVPLLQEAR 660 RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR KERSESEKEN 720 DATLRQFSEQ RTRKSCRKGA QACSSEVPGM MHENEAEAAN GHDADRKKRR NPHSGNNNCI 780 EPAQGVAYPK KRKRKPPSGS NNCTESVQDV VIQRKRRRKP PSGNNNCSDS VQDDAVQTEK 840 RKQQSESNKC IEPMQDNSSS HSLSTLCVTT NNEAESFGHS LTIKREKHPK PSPKQCSKKR 900 VHTEFGEEQS SVCSEDSEFS GATGGAEMMH NNGVEVDILG VDDASGKKSI AKPGSKRKTC 960 MNLSTSQSSR IISAEDFENL PSSKKVEKRG NSSLRQHSRS RKSSELSGAK DDITLASFLQ 1020 DKLKKSIPSF ADGDEVKLAG FLRNKSKNRR HQISENAHLS IMKGAEQRDK TNQIQFGLQH 1080 CEAKTNCDGV IPENSMFRSS LKQTIMSSDM NIVGDGIVND TVACHEVVRE PERIDQDGNC 1140 EADGITLVQL RKRLKKRGPA SSCMRRESEL PSNG

Sequence ? help Back to Top

Protein Sequence Length: 1174 aa Download sequence

MSLHDQYDTG KEKEKEEEEV DEEEEEEEEL SVSENDDSFD EDMEALKQAC LRTGADLNDL  60
QIAASDNDRP STSDAAVSSA ALAYSGSEDD MEIFRSIRSR FALSVDVCEP LSIQPPCFLP  120
PISSDDDAED DFETLRIIQR RFRAYSSNDT RGISTEDHIE KTEPIYTTSM PLQDATSNDI  180
CERFQDYEKA GNISHFSSDN VEMQPVGLVQ WDHSHANELS TLADNSSRFP KSAQQLIDAI  240
KKNRSYQKFL RSKLTQIESK IEENKKLKER VKILKDFQVS CKKITGRSLS INKDPRIQLI  300
SARKSRTSKD PEVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS RGERENLVKG  360
IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF LPKVNWDQLA  420
SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF DIAVSLRSNR  480
TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK GRTGTQCSNR  540
WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC RERWVNSLDP  600
ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP KAVPLLQEAR  660
RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR KERSESEKEN  720
DATLRQFSEQ RTRKSCRKGA QACSSEVPGM MHENEAEAAN GHDADRKKRR NPHSGNNNCI  780
EPAQGVAYPK KRKRKPPSGS NNCTESVQDV VIQRKRRRKP PSGNNNCSDS VQDDAVQTEK  840
RKQQSESNKC IEPMQDNSSS HSLSTLCVTT NNEAESFGHS LTIKREKHPK PSPKQCSKKR  900
VHTEFGEEQS SVCSEDSEFS GATGGAEMMH NNGVEVDILG VDDASGKKSI AKPGSKRKTC  960
MNLSTSQSSR IISAEDFENL PSSKKVEKRG NSSLRQHSRS RKSSELSGAK DDITLASFLQ  1020
DKLKKSIPSF ADGDEVKLAG FLRNKSKNRR HQISENAHLS IMKGAEQRDK TNQIQFGLQH  1080
CEAKTNCDGV IPENSMFRSS LKQTIMSSDM NIVGDGIVND TVACHEVVRE PERIDQDGNC  1140
EADGITLVQL RKRLKKRGPA SSCMRRESEL PSNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	766	795	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
2	767	796	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
3	789	796	PKKRKRKP
4	790	795	KKRKRK
5	790	819	KKRKRKPPSGSNNCTESVQDVVIQRKRRRK
6	791	820	KKRKRKPPSGSNNCTESVQDVVIQRKRRRK
7	814	843	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
8	814	818	RKRRR
9	815	844	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
10	816	845	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
11	1151	1157	RKRLKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein