PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292349.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 1175aa MW: 132634 Da PI: 6.8997

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292349.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.8e-08	447	491	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+eEd+ l+ v++ G +W Ia + +Rt+ qc r+q XP_021292349.1 447 NPWTAEEDKNLLFIVQEKGISNWFDIAVSLRSNRTPFQCLARYQR 491 58*****************************************96 PP
2	Myb_DNA-binding	43.7	6.2e-14	499	543	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd++l av+ +G +W ++a+t+ gRt+ qc +rw k XP_021292349.1 499 KGDWTEEEDDQLRIAVEVFGECDWQSVASTLK-GRTGTQCSNRWIK 543 789**************************9.*********87 PP
3	Myb_DNA-binding	52.1	1.5e-16	553	596	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT +Ed++l+ av ++G+++W++Ia+ ++ gRt qc++rw + XP_021292349.1 553 GRWTHDEDKRLKVAVMLFGPKNWRKIAEVIP-GRTQVQCRERWVN 596 8****************************.*********87 PP
4	Myb_DNA-binding	51.6	2.2e-16	605	648	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT+eEd++l a++++G W+++a++m+ Rt++qc rw ++ XP_021292349.1 605 GRWTKEEDLRLEAAIEEHGCC-WSKVAACMP-SRTDNQCWRRWKTL 648 89***************88.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1175 aa Download sequence
MSLHDQYDTG KEKEKEEEEV DEEEEEEEEL SVSENDDSFD EDMEALKQAC LRTGADLNDL 60 QIAASDNDRP STSDAAVSSA ALAYSGSEDD MEIFRSIRSR FALSVDVCEP LSIQPPCFLP 120 PISSDDDAED DFETLRIIQR RFRAYSSNDT RGISTEDHIE KTEPIYTTSM PLQDATSNDI 180 CERFQDYEKA GNISHFSSDN VEMQPVGLVQ WDHSHANELS TLADNSSRFP KSAQQLIDAI 240 KKNRSYQKFL RSKLTQIESK IEENKKLKER VKILKDFQVS CKKITGRSLS INKDPRIQLI 300 SARKSRTSKD PEVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS RGERENLVKG 360 IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF LPKVNWDQLA 420 SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF DIAVSLRSNR 480 TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK GRTGTQCSNR 540 WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC RERWVNSLDP 600 ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP KAVPLLQEAR 660 RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR KESRSESEKE 720 NDATLRQFSE QRTRKSCRKG AQACSSEVPG MMHENEAEAA NGHDADRKKR RNPHSGNNNC 780 IEPAQGVAYP KKRKRKPPSG SNNCTESVQD VVIQRKRRRK PPSGNNNCSD SVQDDAVQTE 840 KRKQQSESNK CIEPMQDNSS SHSLSTLCVT TNNEAESFGH SLTIKREKHP KPSPKQCSKK 900 RVHTEFGEEQ SSVCSEDSEF SGATGGAEMM HNNGVEVDIL GVDDASGKKS IAKPGSKRKT 960 CMNLSTSQSS RIISAEDFEN LPSSKKVEKR GNSSLRQHSR SRKSSELSGA KDDITLASFL 1020 QDKLKKSIPS FADGDEVKLA GFLRNKSKNR RHQISENAHL SIMKGAEQRD KTNQIQFGLQ 1080 HCEAKTNCDG VIPENSMFRS SLKQTIMSSD MNIVGDGIVN DTVACHEVVR EPERIDQDGN 1140 CEADGITLVQ LRKRLKKRGP ASSCMRRESE LPSNG

Sequence ? help Back to Top

Protein Sequence Length: 1175 aa Download sequence

MSLHDQYDTG KEKEKEEEEV DEEEEEEEEL SVSENDDSFD EDMEALKQAC LRTGADLNDL  60
QIAASDNDRP STSDAAVSSA ALAYSGSEDD MEIFRSIRSR FALSVDVCEP LSIQPPCFLP  120
PISSDDDAED DFETLRIIQR RFRAYSSNDT RGISTEDHIE KTEPIYTTSM PLQDATSNDI  180
CERFQDYEKA GNISHFSSDN VEMQPVGLVQ WDHSHANELS TLADNSSRFP KSAQQLIDAI  240
KKNRSYQKFL RSKLTQIESK IEENKKLKER VKILKDFQVS CKKITGRSLS INKDPRIQLI  300
SARKSRTSKD PEVNDKNVSA DYGPPENSSV TNYRMALTKF PLALQRKKWS RGERENLVKG  360
IRQQFQESAL QVSVDWFSGA DGSSGDGSNL DDIIATVKDL EITPERIREF LPKVNWDQLA  420
SMYVKGRSGA ECETRWLNHE DPLINCNPWT AEEDKNLLFI VQEKGISNWF DIAVSLRSNR  480
TPFQCLARYQ RSLNACILKG DWTEEEDDQL RIAVEVFGEC DWQSVASTLK GRTGTQCSNR  540
WIKSLHPTRQ RVGRWTHDED KRLKVAVMLF GPKNWRKIAE VIPGRTQVQC RERWVNSLDP  600
ALNLGRWTKE EDLRLEAAIE EHGCCWSKVA ACMPSRTDNQ CWRRWKTLHP KAVPLLQEAR  660
RIRKATLISN FVDRESERPA LGPNDFYMPL LLTNSTAEPE NTNLPSKGKR KESRSESEKE  720
NDATLRQFSE QRTRKSCRKG AQACSSEVPG MMHENEAEAA NGHDADRKKR RNPHSGNNNC  780
IEPAQGVAYP KKRKRKPPSG SNNCTESVQD VVIQRKRRRK PPSGNNNCSD SVQDDAVQTE  840
KRKQQSESNK CIEPMQDNSS SHSLSTLCVT TNNEAESFGH SLTIKREKHP KPSPKQCSKK  900
RVHTEFGEEQ SSVCSEDSEF SGATGGAEMM HNNGVEVDIL GVDDASGKKS IAKPGSKRKT  960
CMNLSTSQSS RIISAEDFEN LPSSKKVEKR GNSSLRQHSR SRKSSELSGA KDDITLASFL  1020
QDKLKKSIPS FADGDEVKLA GFLRNKSKNR RHQISENAHL SIMKGAEQRD KTNQIQFGLQ  1080
HCEAKTNCDG VIPENSMFRS SLKQTIMSSD MNIVGDGIVN DTVACHEVVR EPERIDQDGN  1140
CEADGITLVQ LRKRLKKRGP ASSCMRRESE LPSNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	767	796	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
2	768	797	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
3	790	797	PKKRKRKP
4	791	796	KKRKRK
5	791	820	KKRKRKPPSGSNNCTESVQDVVIQRKRRRK
6	792	821	KKRKRKPPSGSNNCTESVQDVVIQRKRRRK
7	815	844	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
8	815	819	RKRRR
9	816	845	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
10	817	846	RKKRRNPHSGNNNCIEPAQGVAYPKKRKRK
11	1152	1158	RKRLKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	0.0	MYB family protein