PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292161.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ERF

Protein Properties

Length: 389aa MW: 45025.7 Da PI: 4.7882

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.6	3.1e-13	93	136	4	51
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 kGVr+++ +g++++eIrd + r kr +lg++ t+eeAa+ + ++ XP_021292161.1 93 KGVRRRP-WGKFASEIRDpF-----RkKRLWLGTYTTEEEAAAVYQTKKR 136 9****.******76.....45*************98866665 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MLGLQARNLS RMNSDKENMD PSFNLPKKLR IVYNDPDVTD SSSDEEEIKL KNKILGTKRV 60 VKEISYSAVP REFTREHDVS ESKRVRKFSS MSKGVRRRPW GKFASEIRDP FRKKRLWLGT 120 YTTEEEAAAV YQTKKREFEV MMAGEQEDNS SFTVKSEDTN YSQLSPSSVL DDVSVNPVMK 180 EHVVKKVVKE YKIFQEPKTV KQSASIKDVH ADLWKDQASV MDLWELPSDS WKETFEPVSA 240 KDSWKDEASV VNLWEPPSDS WKKTFEPASI KDLWKDEAFV MNLCEPPSET FEPASVKDLW 300 KDENSVKDLW EPPSASESWN ELFESCVVEN YMNLCSSVLE RCMNFWLNDN AANNLQPLVD 360 NAKDKFINLP DITFDHKTMA WLDEIVLQA

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MLGLQARNLS RMNSDKENMD PSFNLPKKLR IVYNDPDVTD SSSDEEEIKL KNKILGTKRV  60
VKEISYSAVP REFTREHDVS ESKRVRKFSS MSKGVRRRPW GKFASEIRDP FRKKRLWLGT  120
YTTEEEAAAV YQTKKREFEV MMAGEQEDNS SFTVKSEDTN YSQLSPSSVL DDVSVNPVMK  180
EHVVKKVVKE YKIFQEPKTV KQSASIKDVH ADLWKDQASV MDLWELPSDS WKETFEPVSA  240
KDSWKDEASV VNLWEPPSDS WKKTFEPASI KDLWKDEAFV MNLCEPPSET FEPASVKDLW  300
KDENSVKDLW EPPSASESWN ELFESCVVEN YMNLCSSVLE RCMNFWLNDN AANNLQPLVD  360
NAKDKFINLP DITFDHKTMA WLDEIVLQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	99	KRVRKFSSMSKGVRRRP
2	96	115	RRRPWGKFASEIRDPFRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	1e-21	ERF family protein