PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021292141.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 484aa MW: 53807.9 Da PI: 6.7327

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021292141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G g W+ I +++g ++t+ q++s+ qk+ XP_021292141.1 59 REKWTEEEHQKFLEALRLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MATQDQVEGT TSPNALKSGI CCSNSSPESE TLTQFHELYT FKHDHTPKVR KPYTITKQRE 60 KWTEEEHQKF LEALRLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVVRE SNGGFEGSIK 120 PIEIPPPRPK RKPVHPYPRK SVDSLKGILP SSEPERSPSP SQFVREQENK SPTSVLSAFT 180 SDAMGSAASE QQNGCSSPTS CATNMQSINT SPVEKDIDYA TSNSSAEEEK ASLSSVKVFG 240 HSAVEDVLPM KLNADFKGFV GAKADATMVV PFTSIKLFGK TVQVKDSHKP SMDAENFKSP 300 TSKTAQGEID AVGEMLVQAL PSTRLDTRLS LGSVTEDWSV VPSQANLSPY MEIYPDKVDH 360 VESTSDASLP WWTFYQGLPF YYITSFNQTQ TDSCVEERMK EKEIQNERSS TGSNTSSVSQ 420 AENREKNSDS VDSQCQHPCP EGKTTSQKCS KGFVPYKRCL AERDMSSSVV MSEERERQRS 480 RVCS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MATQDQVEGT TSPNALKSGI CCSNSSPESE TLTQFHELYT FKHDHTPKVR KPYTITKQRE  60
KWTEEEHQKF LEALRLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVVRE SNGGFEGSIK  120
PIEIPPPRPK RKPVHPYPRK SVDSLKGILP SSEPERSPSP SQFVREQENK SPTSVLSAFT  180
SDAMGSAASE QQNGCSSPTS CATNMQSINT SPVEKDIDYA TSNSSAEEEK ASLSSVKVFG  240
HSAVEDVLPM KLNADFKGFV GAKADATMVV PFTSIKLFGK TVQVKDSHKP SMDAENFKSP  300
TSKTAQGEID AVGEMLVQAL PSTRLDTRLS LGSVTEDWSV VPSQANLSPY MEIYPDKVDH  360
VESTSDASLP WWTFYQGLPF YYITSFNQTQ TDSCVEERMK EKEIQNERSS TGSNTSSVSQ  420
AENREKNSDS VDSQCQHPCP EGKTTSQKCS KGFVPYKRCL AERDMSSSVV MSEERERQRS  480
RVCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	5e-46	MYB_related family protein