PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021291567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 155aa MW: 17816.9 Da PI: 10.1063 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44 | 2.9e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ t+ kR++g+lKK +EL +LC++ ++ iifs XP_021291567.1 11 IPNESVRKATLKKRKAGLLKKLSELATLCGVTACAIIFSG 50 889***********************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MGRKKVKHEL IPNESVRKAT LKKRKAGLLK KLSELATLCG VTACAIIFSG YNTQPDVWPS 60 PIDAFRVLDK FNNLPADKQG KYMMDQKVLL RRIMLQLNEK LEKQREKNRE LEVELALAET 120 NYDFNSLQSS EELVHLLKDK IEFVMNKIES KGLKG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKHELIPNESVRKATLKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 3e-25 | M-type_MADS family protein |