PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291380.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 414aa MW: 46983.7 Da PI: 5.7479

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	207	258	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_021291380.1 207 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 258 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MEKEENYSAN FTGLDYSLDH HSHDHHHHHH HQDQLMKQPR IGETSGDNNG MIDYMLNNPQ 60 QQQQISSSGF CSSTPTSYDK LSFADVMQFA DFGPKLALNQ TRIPEEETGI DPAGYFLRFP 120 VLNDRLEDQS LMVPPSGIEN VENRAAGILV EEKGNREDEE ARVSDNASVQ LRFLGEDHVQ 180 NKNPTTEAKN KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR 240 GDQASIIGGA IEFVRELEQL LQCLESQKRR RLYGEASSRP MGDTSMAIQQ QQQPFFPAPM 300 SLPNDQIKLV DFDTGLREET AENKSCLADV EVKLLGFDAM IKILSRRRPG QLIKTIAALE 360 DLQLNILHTN ITTIEQTVLY SFNVKVASEA RFSAEDIASS VQQIFTFIQA NGSM

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MEKEENYSAN FTGLDYSLDH HSHDHHHHHH HQDQLMKQPR IGETSGDNNG MIDYMLNNPQ  60
QQQQISSSGF CSSTPTSYDK LSFADVMQFA DFGPKLALNQ TRIPEEETGI DPAGYFLRFP  120
VLNDRLEDQS LMVPPSGIEN VENRAAGILV EEKGNREDEE ARVSDNASVQ LRFLGEDHVQ  180
NKNPTTEAKN KRKRPRTIKT SEEVESQRMT HIAVERNRRK QMNEHLRVLR SLMPGSYVQR  240
GDQASIIGGA IEFVRELEQL LQCLESQKRR RLYGEASSRP MGDTSMAIQQ QQQPFFPAPM  300
SLPNDQIKLV DFDTGLREET AENKSCLADV EVKLLGFDAM IKILSRRRPG QLIKTIAALE  360
DLQLNILHTN ITTIEQTVLY SFNVKVASEA RFSAEDIASS VQQIFTFIQA NGSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	219	RMTHIAVERNRR
2	268	272	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-137	bHLH family protein