PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291379.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 417aa MW: 47409.3 Da PI: 6.0298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	210	261	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_021291379.1 210 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 261 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MLFCYKLDFF QANFTGLDYS LDHHSHDHHH HHHHQDQLMK QPRIGETSGD NNGMIDYMLN 60 NPQQQQQISS SGFCSSTPTS YDKLSFADVM QFADFGPKLA LNQTRIPEEE TGIDPAGYFL 120 RFPVLNDRLE DQSLMVPPSG IENVENRAAG ILVEEKGNRE DEEARVSDNA SVQLRFLGED 180 HVQNKNPTTE AKNKRKRPRT IKTSEEVESQ RMTHIAVERN RRKQMNEHLR VLRSLMPGSY 240 VQRGDQASII GGAIEFVREL EQLLQCLESQ KRRRLYGEAS SRPMGDTSMA IQQQQQPFFP 300 APMSLPNDQI KLVDFDTGLR EETAENKSCL ADVEVKLLGF DAMIKILSRR RPGQLIKTIA 360 ALEDLQLNIL HTNITTIEQT VLYSFNVKVA SEARFSAEDI ASSVQQIFTF IQANGSM

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MLFCYKLDFF QANFTGLDYS LDHHSHDHHH HHHHQDQLMK QPRIGETSGD NNGMIDYMLN  60
NPQQQQQISS SGFCSSTPTS YDKLSFADVM QFADFGPKLA LNQTRIPEEE TGIDPAGYFL  120
RFPVLNDRLE DQSLMVPPSG IENVENRAAG ILVEEKGNRE DEEARVSDNA SVQLRFLGED  180
HVQNKNPTTE AKNKRKRPRT IKTSEEVESQ RMTHIAVERN RRKQMNEHLR VLRSLMPGSY  240
VQRGDQASII GGAIEFVREL EQLLQCLESQ KRRRLYGEAS SRPMGDTSMA IQQQQQPFFP  300
APMSLPNDQI KLVDFDTGLR EETAENKSCL ADVEVKLLGF DAMIKILSRR RPGQLIKTIA  360
ALEDLQLNIL HTNITTIEQT VLYSFNVKVA SEARFSAEDI ASSVQQIFTF IQANGSM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	222	RMTHIAVERNRR
2	271	275	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-137	bHLH family protein