PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291303.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 271aa MW: 31762.7 Da PI: 9.6038

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.9	5.7e-19	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl XP_021291303.1 21 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 68 79********************************************97 PP
2	Myb_DNA-binding	51.7	1.9e-16	74	118	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ XP_021291303.1 74 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 118 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MSWAVMAGHL GWGIIEEGWR KGPWTAEEDR LLIEYVRVHG EGRWNSVARL AGLKRNGKSC 60 RLRWVNYLRP DLKRGQITPH EESIILELHA RWGNRWSTIA RSLPGRTDNE IKNYWRTHFK 120 KKAKLSPDNS DKAKARLLKR QQFQQQQLLQ QQEQQRQQQQ QQQQQQQQQQ QQQLQLNQFD 180 MKRIMSLLDE NEHRAPYVPQ LRQEMATAYP NTTEEQGFFY PMINGNVSGS DTSNEEILWD 240 GLWNLDDVHG NFGSACATSK ATLHNLVTPF C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	4e-90	MYB family protein