PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290466.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

DBB

Protein Properties

Length: 238aa MW: 26187.7 Da PI: 4.4368

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.8e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ XP_021290466.1 4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	27.3	7.6e-09	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + + C+ ++e + +fC +++ l+C+dC + +H+ H XP_021290466.1 53 KLPPCDICQERAAFIFCVEDRALFCQDCDEPIHSAgslsanH 94 6789****99*******************656666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPPCDIC 60 QERAAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVALSSSC NKNTEKSGLE 120 PPNKSAPLTS MKMPAQQQSN FTSSWAVDDL LQFSDIESPE KKEQLELGEL EWLADIGLFG 180 EQLSQEALAA AEVPQLPIPQ SGNFNSCRPT KYSMPLKKPR IEIPEDDDDE FFTVPDLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	4e-79	DBB family protein