PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290367.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 875aa MW: 96337.7 Da PI: 7.0381

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.8e-19	321	420	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_021290367.1 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 413 99************************555566778***********99899999999.*******************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_021290367.1 414 LVMGFRK 420 7877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence
MALKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQAVFCDVF HSKDSGWREC 60 TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKPGFNPM IEDEKPNGFS IVKGDAGQLH 120 STSADNQFSG VSIENLKLMQ LSSNAESIGL RQLLQLHHDD ASGSLGQMKQ EEVLPPPREI 180 GSTCMSNINQ VSNGSVQSVK PIICKANIYD SLPQTNLSIS LGGPLGSQNV FPCSVVDEKG 240 KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI 360 QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK 420 ATNTTAGQSL KGSTDPHLNA LSKHLNSASG DISWHKSDKH EDRTREGLLL PSMLVQERKR 480 TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPSIKP SVVTIENHDF EEYDEPPVFG 540 KRSIFAVHSN GGQEQWAQCD SCSKWRRLPV DALLPPKWTC ADNNWDQSRS TCSAPDELTP 600 REVENLLRLN KDFKKRRIVA YHRPTLEHES SGLDALANAA ILGDNVDNLG TTSVATTTKH 660 PRHRPGCSCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRN 720 QKAWGSREEA EVDSSSKHVS SHHDPCENEA RSVNELESKS QGNNLPPKLV EANKGQIDLN 780 CDPDREDDSQ LGSTQVSMMS LLQVASLPLE TYLKENGLTS LISEQQANSA SHAPPQIVAE 840 GDAQDNSCFP SAAEEHESKD EENGETGSDR VENDP

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence

MALKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQAVFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKPGFNPM IEDEKPNGFS IVKGDAGQLH  120
STSADNQFSG VSIENLKLMQ LSSNAESIGL RQLLQLHHDD ASGSLGQMKQ EEVLPPPREI  180
GSTCMSNINQ VSNGSVQSVK PIICKANIYD SLPQTNLSIS LGGPLGSQNV FPCSVVDEKG  240
KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK  420
ATNTTAGQSL KGSTDPHLNA LSKHLNSASG DISWHKSDKH EDRTREGLLL PSMLVQERKR  480
TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPSIKP SVVTIENHDF EEYDEPPVFG  540
KRSIFAVHSN GGQEQWAQCD SCSKWRRLPV DALLPPKWTC ADNNWDQSRS TCSAPDELTP  600
REVENLLRLN KDFKKRRIVA YHRPTLEHES SGLDALANAA ILGDNVDNLG TTSVATTTKH  660
PRHRPGCSCI VCIQPPSGKG KHKPTCTCNV CMTVKRRFKT LMMRKKKRQS EREAEIAQRN  720
QKAWGSREEA EVDSSSKHVS SHHDPCENEA RSVNELESKS QGNNLPPKLV EANKGQIDLN  780
CDPDREDDSQ LGSTQVSMMS LLQVASLPLE TYLKENGLTS LISEQQANSA SHAPPQIVAE  840
GDAQDNSCFP SAAEEHESKD EENGETGSDR VENDP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	695	706	KRRFKTLMMRKK
2	695	708	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein