PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290366.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 876aa MW: 96218.5 Da PI: 6.738

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.3	6.8e-19	321	420	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_021290366.1 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 413 99************************555566778***********99899999999.*******************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_021290366.1 414 LVMGFRK 420 7877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence
MALKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQAVFCDVF HSKDSGWREC 60 TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKPGFNPM IEDEKPNGFS IVKGDAGQLH 120 STSADNQFSG VSIENLKLMQ LSSNAESIGL RQLLQLHHDD ASGSLGQMKQ EEVLPPPREI 180 GSTCMSNINQ VSNGSVQSVK PIICKANIYD SLPQTNLSIS LGGPLGSQNV FPCSVVDEKG 240 KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI 360 QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK 420 ATNTTAGQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH 480 LNSASGDISW HKSDKHEDRT REGLLLPSML VQERKRTRNI GSKSKRLLID SQDALELKLT 540 WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVHSNGGQE QWAQCDSCSK 600 WRRLPVDALL PPKWTCADNN WDQSRSTCSA PDELTPREVE NLLRLNKDNL GTTSVATTTK 660 HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR 720 NQKAWGSREE AEVDSSSKHV SSHHDPCENE ARSVNELESK SQGNNLPPKL VEANKGQIDL 780 NCDPDREDDS QLGSTQVSMM SLLQVASLPL ETYLKENGLT SLISEQQANS ASHAPPQIVA 840 EGDAQDNSCF PSAAEEHESK DEENGETGSD RVENDP

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence

MALKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQAVFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKPGFNPM IEDEKPNGFS IVKGDAGQLH  120
STSADNQFSG VSIENLKLMQ LSSNAESIGL RQLLQLHHDD ASGSLGQMKQ EEVLPPPREI  180
GSTCMSNINQ VSNGSVQSVK PIICKANIYD SLPQTNLSIS LGGPLGSQNV FPCSVVDEKG  240
KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK  420
ATNTTAGQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH  480
LNSASGDISW HKSDKHEDRT REGLLLPSML VQERKRTRNI GSKSKRLLID SQDALELKLT  540
WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVHSNGGQE QWAQCDSCSK  600
WRRLPVDALL PPKWTCADNN WDQSRSTCSA PDELTPREVE NLLRLNKDNL GTTSVATTTK  660
HPRHRPGCSC IVCIQPPSGK GKHKPTCTCN VCMTVKRRFK TLMMRKKKRQ SEREAEIAQR  720
NQKAWGSREE AEVDSSSKHV SSHHDPCENE ARSVNELESK SQGNNLPPKL VEANKGQIDL  780
NCDPDREDDS QLGSTQVSMM SLLQVASLPL ETYLKENGLT SLISEQQANS ASHAPPQIVA  840
EGDAQDNSCF PSAAEEHESK DEENGETGSD RVENDP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	696	707	KRRFKTLMMRKK
2	696	709	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein