PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290365.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 911aa MW: 100079 Da PI: 6.7937

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.2	7.2e-19	321	420	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_021290365.1 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 413 99************************555566778***********99899999999.*******************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_021290365.1 414 LVMGFRK 420 7877776 PP

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence
MALKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQAVFCDVF HSKDSGWREC 60 TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKPGFNPM IEDEKPNGFS IVKGDAGQLH 120 STSADNQFSG VSIENLKLMQ LSSNAESIGL RQLLQLHHDD ASGSLGQMKQ EEVLPPPREI 180 GSTCMSNINQ VSNGSVQSVK PIICKANIYD SLPQTNLSIS LGGPLGSQNV FPCSVVDEKG 240 KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI 360 QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK 420 ATNTTAGQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH 480 LNSASGDISW HKSDKHEDRT REGLLLPSML VQERKRTRNI GSKSKRLLID SQDALELKLT 540 WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVHSNGGQE QWAQCDSCSK 600 WRRLPVDALL PPKWTCADNN WDQSRSTCSA PDELTPREVE NLLRLNKDFK KRRIVAYHRP 660 TLEHESSGLD ALANAAILGD NVDNLGTTSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP 720 TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQKAW GSREEAEVDS SSKHVSSHHD 780 PCENEARSVN ELESKSQGNN LPPKLVEANK GQIDLNCDPD REDDSQLGST QVSMMSLLQV 840 ASLPLETYLK ENGLTSLISE QQANSASHAP PQIVAEGDAQ DNSCFPSAAE EHESKDEENG 900 ETGSDRVEND P

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence

MALKSCMNGL CGASTSIEWR KGWTLRSGDF ANLCDKCGSA YEQAVFCDVF HSKDSGWREC  60
TSCGKRLHCG CIASRCLLEL LDSGGVNCIS CTKKPGFNPM IEDEKPNGFS IVKGDAGQLH  120
STSADNQFSG VSIENLKLMQ LSSNAESIGL RQLLQLHHDD ASGSLGQMKQ EEVLPPPREI  180
GSTCMSNINQ VSNGSVQSVK PIICKANIYD SLPQTNLSIS LGGPLGSQNV FPCSVVDEKG  240
KMSSVLQQAS KSRHLLPKPP KSVLATGLEV NAGMVPPIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLKI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLVMGFRK  420
ATNTTAGQET LPSAIPNGSL SSESFFSGVF ENLPIISGYS GLLQSLKGST DPHLNALSKH  480
LNSASGDISW HKSDKHEDRT REGLLLPSML VQERKRTRNI GSKSKRLLID SQDALELKLT  540
WEEAQDLLRP PPSIKPSVVT IENHDFEEYD EPPVFGKRSI FAVHSNGGQE QWAQCDSCSK  600
WRRLPVDALL PPKWTCADNN WDQSRSTCSA PDELTPREVE NLLRLNKDFK KRRIVAYHRP  660
TLEHESSGLD ALANAAILGD NVDNLGTTSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP  720
TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQKAW GSREEAEVDS SSKHVSSHHD  780
PCENEARSVN ELESKSQGNN LPPKLVEANK GQIDLNCDPD REDDSQLGST QVSMMSLLQV  840
ASLPLETYLK ENGLTSLISE QQANSASHAP PQIVAEGDAQ DNSCFPSAAE EHESKDEENG  900
ETGSDRVEND P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	731	742	KRRFKTLMMRKK
2	731	744	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein