PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021290283.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 415aa MW: 46481.5 Da PI: 5.2109

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021290283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ +++ g+ R++k+c++rw +yl XP_021290283.1 21 RGRWTAEEDEILTKYIQASGEGSWRSLPKKAGLLRCGKSCRLRWINYL 68 8*****************************99**********97 PP
2	Myb_DNA-binding	47.6	3.8e-15	74	119	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+e +v++ + lG++ W++Ia+ ++ gRt++++k++w+++l XP_021290283.1 74 RGNITAQEEETIVKLRAALGNR-WSLIAAQLP-GRTDNEIKNYWNSHL 119 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MREEKREMGR SPCCEKVGLK RGRWTAEEDE ILTKYIQASG EGSWRSLPKK AGLLRCGKSC 60 RLRWINYLRT DLKRGNITAQ EEETIVKLRA ALGNRWSLIA AQLPGRTDNE IKNYWNSHLS 120 RKIYRFTKTI KDTKPGEIDD ITTAGECKRR GGRTSRSAMK RQKLALLSLG IPKNDLTPNE 180 VMESAAQGNT IPGAPIQDRK VMNNWQPNEN HDEDPDSAVE GRRNIGIMHG SCMHSSAGKA 240 GKYDESKSRG IALSSGEESC SAVETYGSCS ERESEEVQGP YEWLDSEIKR LSSVLQSKGV 300 DPSGNRGFTT NVENEARVIT EDRVNGVQRG PEKDKERQSC GIWSSNAEII GKSGELQMSS 360 FSSPAETSWF DEDWLDWDSA AGFGQCHDDD QWELWDDSDK VLCQLWDDGN GDESA

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MREEKREMGR SPCCEKVGLK RGRWTAEEDE ILTKYIQASG EGSWRSLPKK AGLLRCGKSC  60
RLRWINYLRT DLKRGNITAQ EEETIVKLRA ALGNRWSLIA AQLPGRTDNE IKNYWNSHLS  120
RKIYRFTKTI KDTKPGEIDD ITTAGECKRR GGRTSRSAMK RQKLALLSLG IPKNDLTPNE  180
VMESAAQGNT IPGAPIQDRK VMNNWQPNEN HDEDPDSAVE GRRNIGIMHG SCMHSSAGKA  240
GKYDESKSRG IALSSGEESC SAVETYGSCS ERESEEVQGP YEWLDSEIKR LSSVLQSKGV  300
DPSGNRGFTT NVENEARVIT EDRVNGVQRG PEKDKERQSC GIWSSNAEII GKSGELQMSS  360
FSSPAETSWF DEDWLDWDSA AGFGQCHDDD QWELWDDSDK VLCQLWDDGN GDESA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	5e-78	MYB family protein