PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021290249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | NF-YC | ||||||||
Protein Properties | Length: 257aa MW: 28268.8 Da PI: 6.1482 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178 | 8.9e-56 | 83 | 186 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_021290249.1 83 QLQSFWASQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 177 89*****99889*********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_021290249.1 178 VDIVPREDL 186 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MDQQGHGQTS ATGVIGTAAA AVPYGVTAYQ PNQMMGTSAP GSVGSIQSPT QPAGLSASSA 60 QLAQHQLAYQ HIHQQQQQQL QQQLQSFWAS QYQEIEQTTD FKNHSLPLAR IKKIMKADED 120 VRMISAEAPV VFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI 180 VPREDLKDEV LASVPRVGGP ADGLPYYYMP PQLAPQVGAP GMTVGKPVMD HALYGQQSRP 240 YAGQQMWPPQ QQPPSDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 162 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-76 | NF-YC family protein |