PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021290194.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 283aa    MW: 31898.8 Da    PI: 9.3193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021290194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.1e-12113165155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +++ h  +Er+RR+++ + +++Lr llP       ++K s ++   +Av+YIk+L+
  XP_021290194.1 113 KKVIHRDIERQRRQEMTTLYSTLRLLLPLeY---LKGKRSISDHMHEAVKYIKHLR 165
                     57789************************77...9*******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MISRPNVQWP LLLSLSKCRV AEVCSIRSQS KRYRGDLGLR NMDCVASEFP SEESTVELFQ  60
FFSIPCQQDS GNPKQDEQNL ILVSKKSDCS RGKRKAATAF GVKDGNAADN KRKKVIHRDI  120
ERQRRQEMTT LYSTLRLLLP LEYLKGKRSI SDHMHEAVKY IKHLRNRIME LSDKREVLKR  180
SSNLHTPSSM PESSPDCSED SVVVRACMVG VEIAINTGLR QGLPLSNVLD VIVAEGLSVV  240
NCISTKVNER MLHTIALEVN DGRSIELSEL QQKLTKLMIH PPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193114KRKAATAFGVKDGNAADNKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.17e-32bHLH family protein