PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021290010.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Trihelix
Protein Properties Length: 265aa    MW: 31707 Da    PI: 8.8159
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021290010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.84e-2527109186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  XP_021290010.1  27 QWSIQETKEFLMIRAELDRSFMETKRNKMLWEVISTRMREKGYNRSAEQCKCKWKNLVTRYKGCETMEADA---MRQQFPFYNELQ 109
                     7********************************************************************95...55689*****98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MEGRHHHPHP PQQQTMGVNV DVDRFPQWSI QETKEFLMIR AELDRSFMET KRNKMLWEVI  60
STRMREKGYN RSAEQCKCKW KNLVTRYKGC ETMEADAMRQ QFPFYNELQA IFSSRMQSIL  120
WTDEGGVTGS KKKAVQLSSD EDDDMEESEL DKGSGIRKKK KGKTGISGGA SGSNNIKEIL  180
GDFMRQQMQM EMQWREEFEA RENERRLKEM EWRQTMQALE NERIMMDRRW REKEEQRRVR  240
EEARAEKRDA LITALLNKLR REEHM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-51Trihelix family protein